View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19588_low_1 (Length: 267)

Name: NF19588_low_1
Description: NF19588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19588_low_1
NF19588_low_1
[»] chr4 (2 HSPs)
chr4 (21-257)||(21834442-21834677)
chr4 (139-180)||(1600295-1600336)
[»] chr6 (9 HSPs)
chr6 (130-257)||(19632275-19632402)
chr6 (138-257)||(6594742-6594861)
chr6 (142-251)||(7994324-7994433)
chr6 (130-251)||(6589465-6589586)
chr6 (130-254)||(10579876-10580000)
chr6 (130-257)||(6394700-6394827)
chr6 (130-257)||(14820529-14820656)
chr6 (130-215)||(6423053-6423138)
chr6 (135-171)||(6597120-6597156)
[»] chr7 (2 HSPs)
chr7 (130-250)||(15092294-15092414)
chr7 (71-100)||(10614398-10614427)
[»] chr3 (1 HSPs)
chr3 (71-100)||(51764737-51764766)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 21834677 - 21834442
Alignment:
Q  21 accgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatcttaaaacaaaaact 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21834677 accgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatcttaaaacaaaaac- 21834579  T
Q  121 acttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||    
T  21834578 acttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtcacttaaatgcaaatcccccaaattaatttctctcagttgt 21834479  T
Q  221 gtacatttttctaccatatgtttcactcccttctctg 257  Q
    |||||| |||||||||||||||||| |||||||||||    
T  21834478 gtacatctttctaccatatgtttcattcccttctctg 21834442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 1600295 - 1600336
Alignment:
Q  139 aagaaggcatccacgacgcgagaagaatttcctcttttcgtc 180  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  1600295 aagaaggcatccatgactcgagaagaatttcctattttcgtc 1600336  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 19632275 - 19632402
Alignment:
Q  130 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 229  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  ||| ||| ||| |||| | ||||||||||| ||| ||  ||||| || | || |||    
T  19632275 atactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttt 19632374  T
Q  230 tctaccatatgtttcactcccttctctg 257  Q
    |||||||  |||||||||||||||||||    
T  19632375 tctaccacgtgtttcactcccttctctg 19632402  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 6594861 - 6594742
Alignment:
Q  138 aaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccat 237  Q
    ||||||||||||| ||||||||||||| || |||  ||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||     
T  6594861 aaagaaggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccac 6594762  T
Q  238 atgtttcactcccttctctg 257  Q
    ||||||  |||||| |||||    
T  6594761 atgtttggctccctcctctg 6594742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 7994433 - 7994324
Alignment:
Q  142 aaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgt 241  Q
    |||||||||  |||||||||||| || ||| |||| ||| |||| ||| |||||||| |||| ||| ||| ||||| | || || |||||||||| ||||    
T  7994433 aaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgt 7994334  T
Q  242 ttcactccct 251  Q
    ||||||||||    
T  7994333 ttcactccct 7994324  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 6589586 - 6589465
Alignment:
Q  130 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 229  Q
    ||||||| ||||| |||||||| || | ||||||| || |||  ||| ||| |||||||| | |||||||| || ||| |||   |||||||| || |||    
T  6589586 atactagtaaagatggcatccatgatgggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttt 6589487  T
Q  230 tctaccatatgtttcactccct 251  Q
    ||||||| ||||||||||||||    
T  6589486 tctaccacatgtttcactccct 6589465  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 10580000 - 10579876
Alignment:
Q  130 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttt-tcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacattt 228  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||| || || |||||||  |||||  |||| | ||| ||||| ||| |||| || ||    
T  10580000 atactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc-cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagtt 10579902  T
Q  229 ttctaccatatgtttcactcccttct 254  Q
    |||||||| |||||| ||||||||||    
T  10579901 ttctaccacatgtttaactcccttct 10579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 6394700 - 6394827
Alignment:
Q  130 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 229  Q
    ||||||||||| | |||||||||||||| | |  | || ||| |||||||| |||| ||  | ||||||||||| ||| ||||||| | |||| || |||    
T  6394700 atactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 6394799  T
Q  230 tctaccatatgtttcactcccttctctg 257  Q
    ||||||| ||||| ||| ||||| ||||    
T  6394800 tctaccacatgttccacacccttttctg 6394827  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 14820529 - 14820656
Alignment:
Q  130 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 229  Q
    ||||||||||||| | |||||||||||||| | || ||||||  ||| |   |||||||| ||  || |||||| ||| ||||||||  |||| || |||    
T  14820529 atactagcaaagatgacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaaccccgccaaattaatctctctcagctgtgtgcagttt 14820628  T
Q  230 tctaccatatgtttcactcccttctctg 257  Q
    | ||||| ||||||||| ||||||||||    
T  14820629 tttaccacatgtttcacacccttctctg 14820656  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 6423053 - 6423138
Alignment:
Q  130 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctca 215  Q
    |||||||||||||||||||||||||  | ||| || |||| | |||| ||| |||| ||| ||||| ||||||| ||| |||||||    
T  6423053 atactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttacatgaaaatctcccaaataaatctctctca 6423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 6597156 - 6597120
Alignment:
Q  135 agcaaagaaggcatccacgacgcgagaagaatttcct 171  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6597156 agcaaagaaggcatccatgacgcaagaagaatttcct 6597120  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 15092414 - 15092294
Alignment:
Q  130 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 229  Q
    ||||||||||| | ||||||||||||||||||| | ||||||  ||| ||| |||| ||| | || || ||||| ||| ||||||| | |||| || |||    
T  15092414 atactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttt 15092315  T
Q  230 tctaccatatgtttcactccc 250  Q
    |||| || |||||||||||||    
T  15092314 tctagcacatgtttcactccc 15092294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 10614398 - 10614427
Alignment:
Q  71 atgagtaaatgcacatttgtaagttgacat 100  Q
    ||||||||||||||||||||||||||||||    
T  10614398 atgagtaaatgcacatttgtaagttgacat 10614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 51764766 - 51764737
Alignment:
Q  71 atgagtaaatgcacatttgtaagttgacat 100  Q
    ||||||||||||||||||||||||||||||    
T  51764766 atgagtaaatgcacatttgtaagttgacat 51764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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