View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19588_low_3 (Length: 226)
Name: NF19588_low_3
Description: NF19588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19588_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 36898909 - 36899128
Alignment:
| Q |
10 |
ataatactagtattatcataaattgatagtaccttaattatcaattacaacttgtgctaaaaaacatacatctcaagaatcattacggattgaatatttt |
109 |
Q |
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| T |
36898909 |
ataatactagtattatcataaattgatagtaccttaattatcaattacaacttgtgctaaaaatcatacatctcaagaatcattacggattgaatatttt |
36899008 |
T |
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| Q |
110 |
gggcagacccacgtctatggtatctac---ctaaccaacttcccataagatttcttgcagacctcttcactcattcctcaattataaaaccttaccacat |
206 |
Q |
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| T |
36899009 |
gggcagacccacgtctatggtatctactatctaaccaacttcccataagatttcttgcagacctcttcactcattcctcaattataaaaccttaccacat |
36899108 |
T |
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| Q |
207 |
tattctaaattttcttacat |
226 |
Q |
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||||| |||||||||||||| |
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| T |
36899109 |
tattccaaattttcttacat |
36899128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 37009197 - 37009132
Alignment:
| Q |
152 |
taagatttcttgcagacctcttcactcattcctcaattataaaaccttaccacattattctaaatt |
217 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
37009197 |
taagatttcttgcaggcctcttcactcactcctcaattataaaaccttaccacatcattccaaatt |
37009132 |
T |
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