View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_12 (Length: 552)
Name: NF19589_high_12
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 544
Target Start/End: Original strand, 40955502 - 40956024
Alignment:
| Q |
21 |
atagcaccaattaacctttcaatatctagtataaacgtacacctaaaaatattttgacgagtagtaaggagaaatcacttggatgatgattgtttagtat |
120 |
Q |
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| T |
40955502 |
atagcaccaattaacctttcaatatctagtataaacgtacacctaaaaatattttgacgagttgtaaggagaaatcacttggatgatgattgtttagtat |
40955601 |
T |
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| Q |
121 |
gaatttatannnnnnnaatgaaataagtattggtatattttttggcgacaaaattagtgatagtatacnnnnnnnaaaatgaacatgtattagttttagt |
220 |
Q |
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| T |
40955602 |
gaatttatatttttttaatgaaataagtattggtatattttttggcgacaaaattagtaatagtatacttttttttaaatgaacatgtattagttttagt |
40955701 |
T |
|
| Q |
221 |
acccctcaagnnnnnnngtattagtattagnnnnnnnnnn----atcaaagtttagtaattagtatactatattgacaaaatattttgacaaaatttgta |
316 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40955702 |
acccctcaagaaaaaa-gtattagtattagtttgttttttttttatcaaagtttagtaattagtatactatattgacaaaatattttgacaaaatttgta |
40955800 |
T |
|
| Q |
317 |
attaagcctactatataaacgataggattgggttgaccgacattttgagttgaatttggagtcatggtcatgcatggttgctagctgctgcttccactat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40955801 |
attaagcctactatataaacgataggattgggttgaccgatattttgagttgaatttggagtcatggtcatgcatggttgct----gctgcttccactat |
40955896 |
T |
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| Q |
417 |
atttctcaccaactaactaatcttagttttagtccaattctatccacacatgcatctaccaaccaagcaagacacaatcctatggtgccaagctgcaaaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40955897 |
atttctcaccaactaactaatcttagttttagtccaattccatccacacatgcatctaccaaccaagcaagacacaatcctatggtgccaagctgcaaaa |
40955996 |
T |
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| Q |
517 |
tcataaacgctcaataataagtataatc |
544 |
Q |
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| T |
40955997 |
tcataaacgctcaataataagtataatc |
40956024 |
T |
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