View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_15 (Length: 538)
Name: NF19589_high_15
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 16 - 523
Target Start/End: Complemental strand, 34110489 - 34109982
Alignment:
| Q |
16 |
atggaacctcaaaccaccacaacccaaagggaaacagtcatataccacaataaaacctaacctaaagcttttcctatttccaaaggatacaaaaatcttt |
115 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110489 |
atggtacctcaaaccaccacagcccaaagggaaacagtcatataccataataaaacctaacctaaagcttttcctatttccaaaggatacaaaaatcttt |
34110390 |
T |
|
| Q |
116 |
aaaagcctccccaaactacttcgtaaaatgcgctcccaacctaaccacctacgaatagcataccaaattctaaatgcaacctcacgagtgacaaaccagt |
215 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110389 |
aaaagcctccccaaactacttcataaaatgggctcccaacctaaccacctacgaatagcataccaaattctaaatgcaacctcacgagtgacaaaccagt |
34110290 |
T |
|
| Q |
216 |
gatcatctgattcgaaacccccctacaaatgacacagcctaccccatttggaactacaaaggaatgctattaacttgcaaagtttgtcaataccagtatc |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110289 |
gatcatccgattcgaaacccccctacaaatgacacagcctaccccatttggaactacaaaggaatgctattaacttgcaaagtttgtcaataccagtatc |
34110190 |
T |
|
| Q |
316 |
actccaataaaacaataataatcatttaattatgaatgagtactttgtttcaaacaaatagaaataaacgagaataatggatactctgatactcttagta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110189 |
actccaataaaacaataataatcatttaattatgaatgagtactttgtttcaaacaaatagaaataaacgagaataatggatactctgatactcttagta |
34110090 |
T |
|
| Q |
416 |
catacaagaaactaaaacaattaagtataagtacttatcccaatactttactagagactatcaaagagatgacgataattttcatcaattatcacggctc |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110089 |
catacaagaaactaaaacaattaagtataagtacttatcccaatagtttactagagagtatcaaagagatgacgataattttcatcaattatcacggctc |
34109990 |
T |
|
| Q |
516 |
tatttatg |
523 |
Q |
| |
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|||||||| |
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| T |
34109989 |
tatttatg |
34109982 |
T |
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