View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_16 (Length: 519)
Name: NF19589_high_16
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 128 - 390
Target Start/End: Complemental strand, 29287370 - 29287105
Alignment:
| Q |
128 |
ggttttgtgaatgtgacggaaaaaatgaagagacgatgatgagatagataga--cataaaatatgcaaggaatgtaggaggggagcaaatgatccaaatc |
225 |
Q |
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| T |
29287370 |
ggttttgtgaatgtgatggaaaaaatgaagagacgatgatgagatagatagagacataaaatatgcaaggagtgtaggaggggagcaaataatccaaatc |
29287271 |
T |
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| Q |
226 |
ctactggtcaaagatcaatatcatcaaatgggtcaccc-aatcgtgtttatggcatgtgcaatgtgttatcaaagttcatatatgaaacaatacttaatt |
324 |
Q |
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||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29287270 |
ctactaatcaaagatcagtatcatcaaatgggtcaccccaatcgtgtttatggcatgtgcaatgtgttatcaaagttcatatatgaaacaatatttaatt |
29287171 |
T |
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| Q |
325 |
ttatgaaaattttcaaacttaaatgcagtagcttaaatttgtcccttgttcaatttagattctcta |
390 |
Q |
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| T |
29287170 |
ttatgaaaattttcaaacttaaatgcagtagcttaaatttgtcccttgttcaatttagattctcta |
29287105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 391 - 507
Target Start/End: Complemental strand, 29284859 - 29284743
Alignment:
| Q |
391 |
gttgcaattgtgcgatttaaaccttatttttacaccttttctcatttactagcctctcgtgcacattttgactaagaaaatagacttgtccattatttcc |
490 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29284859 |
gttgcaattgtgcgatttaaaccttatttttaccccttttctcatttactagcctctcgtgcacattttgactaagaaaatagacatgtccattatttcc |
29284760 |
T |
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| Q |
491 |
aggtgcttgattatatt |
507 |
Q |
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| T |
29284759 |
aggtgcttgattatatt |
29284743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 29287512 - 29287403
Alignment:
| Q |
23 |
aacatattgttatttagctagggtgtcagctgaattcgacaatttaggggaattgattaagttcagccgaaatagtgatgagatcatagctaaattatca |
122 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287512 |
aacatattgttatttagctagggtgtctgctgaattcgaca-tttagggga-ttgattaagttcagccgaaatagtgatgagatcatagctaaattatca |
29287415 |
T |
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| Q |
123 |
actagggttttg |
134 |
Q |
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||||||| |||| |
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| T |
29287414 |
actagggatttg |
29287403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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