View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19589_high_18 (Length: 504)
Name: NF19589_high_18
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_18 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 40948768 - 40949251
Alignment:
| Q |
18 |
aattaatttatttaaattggatcttattgatcattagatttggttattatactctcaagataggaggatgatagagttggattgtttgtagacggcacca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40948768 |
aattaatttatttaaattggatcttattgatcattagatttggtt----------caagataggaggatgatagagttggattgtttgtagacggcacca |
40948857 |
T |
|
| Q |
118 |
tgataaatttgtaagtcatatttaatctaatggtaaaaataaatggtccattatattt-----------------gtatagtattaacatgtacaaacct |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40948858 |
tgataaatttttaagtcatatttaatctaatggtaaaaataaatggtccattatattatagacaaatttgaaatagtatagtattaacatgtacaaacct |
40948957 |
T |
|
| Q |
201 |
ttatgaaattatatgtaattgcgtaccttatagctgtgtagattaattgatcattagtgagatacaagctgtaattgaaaatcaaggtcttgatattccc |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40948958 |
ttatgaaattatatgtaattacgtaccttatagctgtgtagatgaattgatcattggtgagatacaagctgtaattgaaaatcaaggtcttgatattccc |
40949057 |
T |
|
| Q |
301 |
ttgactgatattcaatgcaagaaatagcaaattgtacaacgtgctgtcagaacgggaatggacccaaacatatggctgaattgaggccttcacaaaatca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
40949058 |
ttgactgatattcaatgcaagaaatagcaaattgtacaaagtgctgtcagaacgggaatggacccaaatatatggctgaattgaggcctttacaaaatca |
40949157 |
T |
|
| Q |
401 |
gatttcaacattgagaaatcaagtgtttcccaaactggttggtcattgctagctctcttccatgcttcaataaaacgaccaacagcttcctttg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40949158 |
gatttcaacattgagaaatcaagtgtttcccaaactggttggtcattgctagctctcttccatgcttcaataaaacgaccaacagcttcctttg |
40949251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 245 - 477
Target Start/End: Complemental strand, 45653344 - 45653112
Alignment:
| Q |
245 |
aattgatcattagtgagatacaagctgtaattgaaaatcaaggtcttgatattcccttgactgatattcaatgcaagaaatagcaaattgtacaacgtgc |
344 |
Q |
| |
|
||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||| || | |||| ||| | |||||||||||| ||| |
|
|
| T |
45653344 |
aattgatcattggtgagatacaagttgtaatggaaaatcaaggtcttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaagtgt |
45653245 |
T |
|
| Q |
345 |
tgtcagaacgggaatggacccaaacatatggctgaattgaggccttcacaaaatcagatttcaacattgagaaatcaagtgtttcccaaactggttggtc |
444 |
Q |
| |
|
||||||| | |||| |||||||||| |||||| | || | ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| | |
|
|
| T |
45653244 |
tgtcagagccagaattgacccaaacaaatggctcagatggagtcttcacaaattcagatttcaacatggagaaatcaagtgtttcccaaaccggttggac |
45653145 |
T |
|
| Q |
445 |
attgctagctctcttccatgcttcaataaaacg |
477 |
Q |
| |
|
| |||||||| || || |||||||| ||||||| |
|
|
| T |
45653144 |
agtgctagctttcgtcaatgcttcagtaaaacg |
45653112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 434
Target Start/End: Original strand, 40722 - 40934
Alignment:
| Q |
222 |
cgtaccttatagctgtgtagattaattgatcattagtgagatacaagctgtaattgaaaatcaaggtcttgatattcccttgactgatattcaatgcaag |
321 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||| ||| |||||||| || |
|
|
| T |
40722 |
cgtaccttttagctgtgtacaagaattgatcattggtgagatacaagtagtaatggaaaatcaaagtcttgatattcccttggctgggattcaatgaaat |
40821 |
T |
|
| Q |
322 |
aaatagcaaattgtacaacgtgctgtcagaacgggaatggacccaaacatatggctgaattgaggccttcacaaaatcagatttcaacattgagaaatca |
421 |
Q |
| |
|
||| | ||||||||| || ||| |||| | ||||| |||||||||||||||| || | | ||| | |||||||||| ||||||| ||||||||| |
|
|
| T |
40822 |
aaacaacaaattgtataaagtgttgtcgaagttggaattgacccaaacatatggcggagcagtgctcttgataaaatcagatctcaacatggagaaatca |
40921 |
T |
|
| Q |
422 |
agtgtttcccaaa |
434 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
40922 |
agtgtttgccaaa |
40934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University