View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19589_high_25 (Length: 440)
Name: NF19589_high_25
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 53426549 - 53426140
Alignment:
| Q |
13 |
catcaaagctaagctcaatttaagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53426549 |
catcaaagctaagctcaatataagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
53426450 |
T |
|
| Q |
113 |
caagatcatccttaactcctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatca |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
53426449 |
caagatcatccttaactcctcaatcagagaatgacaatcaagtttatattgtgtatatgggagcttcacattcaactaatggttcccttcgcgaagatca |
53426350 |
T |
|
| Q |
213 |
tgcccatattttaaacacagtgttaaaaaggtacttaattaattgaattgaatatatatatcacgatcaattagctagtattgtaaaatgtgattaatta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53426349 |
tgcccatattttaaacacagtgttaaaaaggtacttaattaattgaatggaatatatatatcacgatcaattagctagtattgtaaaatgtgattaatta |
53426250 |
T |
|
| Q |
313 |
ttggtgatgtgaatcatttaggaatgagaaagctctagtacataactacaaatacggattctcaggctttgcagctcgtttatcaaaaagtgaagcaaac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53426249 |
ttggtgatgtgaatcatttaggaatgagaaagctctagtacataactacaaacacggattctcaggctttgcggctcgtttatcaaaaagtgaagcaaac |
53426150 |
T |
|
| Q |
413 |
tcaattgctc |
422 |
Q |
| |
|
|||||||||| |
|
|
| T |
53426149 |
tcaattgctc |
53426140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 53434678 - 53434471
Alignment:
| Q |
44 |
taaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaatcaaagaa |
143 |
Q |
| |
|
||||||||||||||||| || || ||||| || || | |||||||||||||||||| | |||||||||||||| |||| |||| || | |||||||||| |
|
|
| T |
53434678 |
taaacatgaaaggaaatccaattttattgatattagtgttttactcactcttccttcttcttggagagtcaaggtcatacttagctaataaatcaaagaa |
53434579 |
T |
|
| Q |
144 |
tgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatgcccatattttaaacacagtgttaaaaagg |
243 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||| || |||||| ||||||||||| |||| |
|
|
| T |
53434578 |
tgaaaatcaaatttatattgtgtatatgggagctacggattcaatagatggttcccttcgtaaagatcatgcctatgttttaagcacagtgttaagaagg |
53434479 |
T |
|
| Q |
244 |
tacttaat |
251 |
Q |
| |
|
|| ||||| |
|
|
| T |
53434478 |
taattaat |
53434471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 256
Target Start/End: Complemental strand, 26099611 - 26099395
Alignment:
| Q |
37 |
agaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaat |
136 |
Q |
| |
|
||||| |||||||||||| ||||| || || | ||| |||||| ||||||||| ||||||||| |||||||||| || |||||| ||| || ||||| |
|
|
| T |
26099611 |
agaatgctaaacatgaaaagaaatccaattttcttgatactaacattttactctctcttcctt---cttggagagttaaaatcatctttagctactcaac |
26099515 |
T |
|
| Q |
137 |
caaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatgcccatattttaaacacagtgtt |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||||||||| ||||||||| ||| ||||||||| ||||| |
|
|
| T |
26099514 |
caaagaatgaaaatcaagtttatattgtgtacatgggaggtgtggattcaactaatggttcccttcgtaaagatcatgatcatgttttaaacatggtgtt |
26099415 |
T |
|
| Q |
237 |
aaaaaggtacttaattaatt |
256 |
Q |
| |
|
|| |||||| |||||||||| |
|
|
| T |
26099414 |
aagaaggtaattaattaatt |
26099395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 26099346 - 26099241
Alignment:
| Q |
317 |
tgatgtgaatcatttaggaatgagaaagctctagtacataactacaaatacggattctcaggctttgcagctcgtttatcaaaaagtgaagcaaactcaa |
416 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
26099346 |
tgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaa |
26099247 |
T |
|
| Q |
417 |
ttgctc |
422 |
Q |
| |
|
|||||| |
|
|
| T |
26099246 |
ttgctc |
26099241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 48370819 - 48370936
Alignment:
| Q |
305 |
attaattattggtgatgtgaatcatttaggaatgagaaagctctagtacataactacaaatacggattctcaggctttgcagctcgtttatcaaaaagtg |
404 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||| || |
|
|
| T |
48370819 |
attaattattgttgatgtgaattgtttaggaatgaaaaagctctagtacataactataagcacggattctcaggcttcgcagctcgtttatcgaaaaatg |
48370918 |
T |
|
| Q |
405 |
aagcaaactcaattgctc |
422 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
48370919 |
aagcagcctcaattgctc |
48370936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 53434394 - 53434316
Alignment:
| Q |
329 |
tttaggaatgagaaagctctagtacataactacaaatacggattctcaggctttgcagctcgtttatcaaaaagtgaag |
407 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||||| ||||| |
|
|
| T |
53434394 |
tttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaag |
53434316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 378
Target Start/End: Complemental strand, 53311194 - 53310932
Alignment:
| Q |
131 |
ctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatc----atgcccatattttaa |
226 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| ||||| || |||||| || ||| || |||| |||||| |
|
|
| T |
53311194 |
ctcaatcggagaatgacaaacaagtttatattgtgtacatgggagctgcagattcaactaatagtacccttccaaaatatcatatatatccatgttttaa |
53311095 |
T |
|
| Q |
227 |
acacagtgttaaaaaggtacttaattaat---tgaattgaatatatatat--cacgatcaattagctagtattgtaaaatgtg---attaattattggtg |
318 |
Q |
| |
|
|||| ||||||| ||| || ||| |||| | | |||||||||||||| || |||||||||||||||||| | ||||||| ||||||||||| | |
|
|
| T |
53311094 |
acacggtgttaagaagttaactaactaattaatcagttgaatatatatataacatgatcaattagctagtattttgaaatgtgattattaattattgatc |
53310995 |
T |
|
| Q |
319 |
atgtgaatcattt---aggaatgagaaagctctagtacataactacaaatacggattctcagg |
378 |
Q |
| |
|
|| ||||| |||| |||||||| || ||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
53310994 |
atatgaattatttataaggaatgaaaaggctctcgtacacaattacaaacacggattctcagg |
53310932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 53321948 - 53321838
Alignment:
| Q |
312 |
attggtgatgtgaatcatttaggaatgagaaagctctagtacataactacaaatacggattctcaggctttgcagctcgtttatcaaaaagtgaagcaaa |
411 |
Q |
| |
|
|||| |||||||||| ||||||||| |||| ||| || |||| ||||||||| | ||||||||||| |||||||||| | |||||||| ||||||||| |
|
|
| T |
53321948 |
attgatgatgtgaattatttaggaacgagagggctttaatacacaactacaaacatggattctcaggttttgcagctcttctatcaaaacatgaagcaaa |
53321849 |
T |
|
| Q |
412 |
ctcaattgctc |
422 |
Q |
| |
|
|||||| |||| |
|
|
| T |
53321848 |
ctcaatagctc |
53321838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University