View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_27 (Length: 428)
Name: NF19589_high_27
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 4439153 - 4439563
Alignment:
| Q |
1 |
aaagatttgaaagaattattattatcttatagtggtgtgtatatattgatagaggagtatagaatcagcaaagaaaacgtttttctcctaccaaaacaaa |
100 |
Q |
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| T |
4439153 |
aaagatttgaaagaattattattatcttatagtggtgtgtatatattgatagaggagtatagaatcaacaaagaaagcgtttctctcctaccaaaacaca |
4439252 |
T |
|
| Q |
101 |
gaaaacgtttctctcctaccaaaacaaaggaggagtatagtatccaaacttcttcacctttttgccatcatctgaatacgttgttgcatcaaagaaaaaa |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4439253 |
gaaagcgtttctctcctaccaaaacaaaggaggagtatagtatccaaacttcttcacctttctgccatcatctgaatacgttgttgcatcaaagaaaaaa |
4439352 |
T |
|
| Q |
201 |
gaaatcactagaaaggcaagtgttcaaacgacaatggcagagtcgaactccaaacaacgaaaagcattagaagaagaagacaggatcagtaatttaccag |
300 |
Q |
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| T |
4439353 |
gtaatcactagaaaggcaagtgttcaaacgacaatggcagagtcgaactccaaacaacgaaaagcattagaagaagaagacaggatcagtaatttaccag |
4439452 |
T |
|
| Q |
301 |
acgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439453 |
acgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccg |
4439552 |
T |
|
| Q |
401 |
tgtgctagatt |
411 |
Q |
| |
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||||||||||| |
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| T |
4439553 |
tgtgctagatt |
4439563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 4414154 - 4414029
Alignment:
| Q |
233 |
aatggcagagtcgaactccaaacaacgaaaagcattagaagaag---aagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgc |
329 |
Q |
| |
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||||||||||||||||||||||| | |||| ||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
4414154 |
aatggcagagtcgaactccaaacgagaaaaaacatctgaagaagaagaagacaggatcagtaatttacccgacgatgtgcttaaccacatcctgtcatgc |
4414055 |
T |
|
| Q |
330 |
ctccttaccaaaaccgctgttaccac |
355 |
Q |
| |
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|||| ||||||||||| |||| |||| |
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| T |
4414054 |
ctccctaccaaaaccgttgttgccac |
4414029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 32850241 - 32850143
Alignment:
| Q |
271 |
aagaagaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctc |
369 |
Q |
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| T |
32850241 |
aagaagaagataggatcagtaagttacctgacgatgtgctcaacaacatcttgtcatgcctccctaccaaaaccgcagttgccaccggccgtctgtctc |
32850143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 17467905 - 17468018
Alignment:
| Q |
276 |
gaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgat |
375 |
Q |
| |
|
|||||||| ||||||||||||||||||| | | || ||||||||||| ||| ||| | ||||||||||| ||||| || ||| |||| |||| ||||| |
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| T |
17467905 |
gaagacagaatcagtaatttaccagacggtttactgaaccacatcctatcactccttccaaccaaaaccgccgttacaacaggccgtctatctcgccgat |
17468004 |
T |
|
| Q |
376 |
ggcgacacctttgg |
389 |
Q |
| |
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|||| ||||||||| |
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| T |
17468005 |
ggcgccacctttgg |
17468018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 4453580 - 4453705
Alignment:
| Q |
273 |
gaagaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcacc |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||| ||| | |||| |||| | |||| ||| ||| |||||||| |||| |||| | |
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| T |
4453580 |
gaagaagacaggatcagtaatttaccagatggtctgctcaaccagatcttatcattactcccgatcaaagacgcagttgccactggccgtctatctcgtc |
4453679 |
T |
|
| Q |
373 |
gatggcgacacctttggcaacatctc |
398 |
Q |
| |
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||||||| ||||| ||| | |||||| |
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| T |
4453680 |
gatggcgccacctctggaagcatctc |
4453705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 204 - 411
Target Start/End: Complemental strand, 8396741 - 8396531
Alignment:
| Q |
204 |
atcactagaaaggcaagtgttcaaacgacaatggcagagtcgaactccaaacaacgaaaagcattagaaga---agaagacaggatcagtaatttaccag |
300 |
Q |
| |
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||||||| || |||||||| ||||| |||||||||||||| || || |||| ||||||||||| ||||| ||| |||||||| |||| |||||||| |
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| T |
8396741 |
atcactacaatggcaagtgcccaaacaacaatggcagagtcaaattcaaaacgacgaaaagcatcggaagagaaagatgacaggattagtagtttaccag |
8396642 |
T |
|
| Q |
301 |
acgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccg |
400 |
Q |
| |
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| ||||| ||||||||||||||||||| ||||| |||||||| |||| |||||||| |||| |||| |||||||| |||||||||| ||||||||| |
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| T |
8396641 |
aggatgtcctcaaccacatcctgtcatacctcccgaccaaaactattgtttccactggccgtctttctcgccgatggcaacacctttggaaacatctcca |
8396542 |
T |
|
| Q |
401 |
tgtgctagatt |
411 |
Q |
| |
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||||||||||| |
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| T |
8396541 |
tgtgctagatt |
8396531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 411
Target Start/End: Complemental strand, 8369356 - 8369224
Alignment:
| Q |
279 |
gacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggc |
378 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| | | |||||| ||||| |||| ||| |||| |||| || |||| |
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| T |
8369356 |
gacaggatcagtagtttaccagacgatgtcctcaaccacatcctgtcataccttccgatcaaaactactgttgccaccggccgtctatctcgccagtggc |
8369257 |
T |
|
| Q |
379 |
gacacctttggcaacatctccgtgtgctagatt |
411 |
Q |
| |
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|||||||||| ||||||||| ||||||||||| |
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| T |
8369256 |
aacacctttggaaacatctccatgtgctagatt |
8369224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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