View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_28 (Length: 424)
Name: NF19589_high_28
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 9776213 - 9776038
Alignment:
| Q |
16 |
atgtcggggttatttggtggcaacaagaaaatgattgggtttgtcggcagtgataaacatgatatattaaacaatgaataatgaagatcaaagaggtgaa |
115 |
Q |
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| T |
9776213 |
atgtcggggttagttggtggcaacaggaaaatggttgggtttgtcggcaatgataaacatgatatattaaacaatgaataatgaagatcaaagaggtgaa |
9776114 |
T |
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| Q |
116 |
attatgagggtaaaattgagagcaaagagatgaaactgtgaatacacaattttgtaaatgatcacaatttgtaggt |
191 |
Q |
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| T |
9776113 |
attatgagagtaaaattgagagcaaagagatgaaactgtgaatacacaattttgtaaatgatcacaatttgtaggt |
9776038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 9776002 - 9775920
Alignment:
| Q |
230 |
taacccaaatggtgtacatgttatcggtcatattggtttagccaaaactataccaacaacgcggcaacgaccacaggttatgt |
312 |
Q |
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| T |
9776002 |
taacccaaatggtgtacatgttatcggtcatattggtttagccaaaactataccaacaacgcggcaacaaccacaggttatgt |
9775920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 9775906 - 9775857
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggtttatctcct |
377 |
Q |
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| T |
9775906 |
gttaatatatctttaccc-ctgtaatttaggcgagttccggtttatctcct |
9775857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 161689 - 161741
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggtttatctcctgt |
379 |
Q |
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| T |
161689 |
gttaatatgtctttatcccttgtaatttagacgagtttcggtttatcccctgt |
161741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 2856419 - 2856373
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggtttatc |
373 |
Q |
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|||||||||||||||||| ||||||||| | ||| |||||||||||| |
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| T |
2856419 |
gttaatatatctttatcccctgtaatttggacgagtttcggtttatc |
2856373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 19635911 - 19635862
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggtttatctcc |
376 |
Q |
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|||||||| | |||| |||||||||||||||||| |||||||||| |||| |
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| T |
19635911 |
gttaatatgtatttaccctctgtaatttaggcgagtttcggtttacctcc |
19635862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 2405102 - 2405058
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggttta |
371 |
Q |
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| T |
2405102 |
gttaatatgtctttaccctctgtaatttaggcgagttccggttta |
2405058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 18867304 - 18867260
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggttta |
371 |
Q |
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||||||||||||||| || ||||||||||| ||| |||||||||| |
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| T |
18867304 |
gttaatatatctttaccccctgtaatttagacgagtttcggttta |
18867260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 14530352 - 14530308
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggttta |
371 |
Q |
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||||||||||||||| | |||||||||| ||||| |||||||||| |
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| T |
14530352 |
gttaatatatctttaccgtctgtaatttgggcgagtttcggttta |
14530308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 26167278 - 26167234
Alignment:
| Q |
327 |
gttaatatatctttatcctctgtaatttaggcgaatttcggttta |
371 |
Q |
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| T |
26167278 |
gttaatatgtctttaccccctgtaatttaggcgaattccggttta |
26167234 |
T |
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