View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_31 (Length: 407)
Name: NF19589_high_31
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 41 - 373
Target Start/End: Complemental strand, 6477402 - 6477075
Alignment:
| Q |
41 |
ccacttttttcctttagaaaatatccatgtttatgagctctctctagttcagtttgaactatttgtcacaaattgaatctgtaagacaacattaatcggt |
140 |
Q |
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| T |
6477402 |
ccacttttttcctttagaaaatatccatgtttatgagctctctctagttcagtttgaactatttgtcacaaattgaatctgtaagacaacattaatcgta |
6477303 |
T |
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| Q |
141 |
tgtaacttttttcaaatgtatatccgaataacctactggttttatatttatctaacaaacgtacatgcattagtgatgtttattgaactttcgtaggtta |
240 |
Q |
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| T |
6477302 |
tgtaacttttttcaaatgtatatcagaataacctactggttttatatttatctaacaaacgtacatgcattagtgatgtttattgaactttcgtaggtta |
6477203 |
T |
|
| Q |
241 |
caaacaatggnnnnnnnnnnnnnnnnagtactaaagtttctagctggcctttaaatttttagatttctgctaacctactttataccggaacttgtcaggt |
340 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || |
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| T |
6477202 |
caaacaatg-----cttttttgttttagtactaaaatttctagctggcctttaaattttaagatttctgctaacctactttataccagaacttgtcatgt |
6477108 |
T |
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| Q |
341 |
ctatttcacacagtttattttattaatatatga |
373 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
6477107 |
ctatttcacacagtttatcttattaatatatga |
6477075 |
T |
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