View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_33 (Length: 369)
Name: NF19589_high_33
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 39019745 - 39019413
Alignment:
| Q |
30 |
tactaattggttctctaagatatgtgttggcatgatatatttttcagtgtagaaatggtgagcagacttgtgcaacaacctaagcattgtcacatgatgg |
129 |
Q |
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| T |
39019745 |
tactaattggttctctaagatatgtgttggcatgatatatttttcagtgtagaaatggtgagcagacttgtgcaacaacctaagcattgtcacatgatgg |
39019646 |
T |
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| Q |
130 |
cagacaagataatcttatagtacttgcaatgaccaattgattatggtatattcttagagccatagagatggtgggttagttggttttcagactcattagt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39019645 |
cagacaagataatcttatagtacttgcaatgaccaattgattatggtatattcttagagccatagagatggtgggttagttggttttcagactcattagt |
39019546 |
T |
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| Q |
230 |
gtggtcacaatgtagaaaggatgagcaccatgagatgtgtatttaagctatttgaaacaccaatttctttggactcagctatgcaaacacttgtggaatt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39019545 |
gtggtcacaatgtagaaaggatgagcaccatgagatgtgtatttaagctatttgaaacaccaatttctttggactcagctatgcaaacacttgtggaatt |
39019446 |
T |
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| Q |
330 |
gtcattgtgtgaagcgtaatttatatattcttc |
362 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
39019445 |
ctcattgtgtgaagcgtaatttatattttcttc |
39019413 |
T |
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