View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_34 (Length: 367)
Name: NF19589_high_34
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 28690675 - 28691007
Alignment:
| Q |
20 |
caagttgaacccatattcttggaataaaggtgggtcaatttcaa---attgataactttcacaatgcattgcaataatggtagttcaattcattgtaaat |
116 |
Q |
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| T |
28690675 |
caagttgaacccatattcttggaataaaggtgggtcaatttcaataaattgataactttcacaatgcattgcaaaaatggtagttcaattcattgtaaat |
28690774 |
T |
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| Q |
117 |
ttgttaatttgagataaactttgtatatcctgtacaattttaaaaataaactaaatcttttctacagctgcaaatcttttgtttcttgaatcccctgctg |
216 |
Q |
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| T |
28690775 |
t--------tgagataaactttgtatatcttgtacaattttaaaaataaactaaatcttttctacagctgcaaatcttttgtttcttgaatcccctgctg |
28690866 |
T |
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| Q |
217 |
gagtgggattttcttacaccaacaccaccagtgatataagtgaacttggtgacaccattacaggtaacaataattctatatatcatctaaggattgatac |
316 |
Q |
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| T |
28690867 |
gagtgggattttcttacaccaacaccaccagtgatataagtgaacttggtgacaccattacaggtaacaataattctatatatcatctaaggattgatac |
28690966 |
T |
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| Q |
317 |
aatttttattagtactttcacttaatgtgatttattgatga |
357 |
Q |
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| T |
28690967 |
aatttttattagtactttcacttaatgtgatttattgatga |
28691007 |
T |
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