View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_37 (Length: 352)
Name: NF19589_high_37
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 11901309 - 11901623
Alignment:
| Q |
16 |
catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901309 |
catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca |
11901408 |
T |
|
| Q |
116 |
aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatgg-nnnnnnnntattgctgtagtagaggaaggggta |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| | |
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| T |
11901409 |
aatctcattttcccaccaacttttcagattaggacaatccgaaattgtaagttccttcaaggatggaaaaaacaatattggggtagtagaggaaggggaa |
11901508 |
T |
|
| Q |
215 |
ttaccaacttgannnnnnncttcaatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaact |
314 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901509 |
ttaccaacttgattgttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaact |
11901608 |
T |
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| Q |
315 |
cgcatttgggacagt |
329 |
Q |
| |
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||||||||||||||| |
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| T |
11901609 |
cgcatttgggacagt |
11901623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 12039992 - 12039686
Alignment:
| Q |
16 |
catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca |
115 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||| || || ||| |||||| |||||||| ||||||||||||||| |||||||||||||| |||| |
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| T |
12039992 |
catcatcaagattaggatatagtggcatgcaagctaacttggggcaatattggacatttagtttggaaatgcaactgaaagatggtctatcattatccca |
12039893 |
T |
|
| Q |
116 |
aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatgg-nnnnnnnntattgctgtagtagaggaaggggta |
214 |
Q |
| |
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|||||| ||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| | |
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| T |
12039892 |
tatctcagtttcccaccaactgtttagatttggacaatccgagattgtaagttccttcaaggatggaaaaaataatattggtgtagtaaaggaagggaaa |
12039793 |
T |
|
| Q |
215 |
ttaccaacttgannnnnnncttcaatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaact |
314 |
Q |
| |
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|||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||||| | |
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| T |
12039792 |
ttaccaacttgattgttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaatt |
12039693 |
T |
|
| Q |
315 |
cgcattt |
321 |
Q |
| |
|
||||||| |
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|
| T |
12039692 |
cgcattt |
12039686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 11861203 - 11861038
Alignment:
| Q |
16 |
catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca |
115 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||||| | ||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||| ||| |
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| T |
11861203 |
catcatcaagaccgggatatagtggcatggaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatcattttcccg |
11861104 |
T |
|
| Q |
116 |
aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatgg |
181 |
Q |
| |
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|| || |||| |||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |
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| T |
11861103 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgcaagttccttcaaggatgg |
11861038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 11829071 - 11828906
Alignment:
| Q |
16 |
catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca |
115 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||| ||||||||||||| |||| |
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| T |
11829071 |
catcatcaagaccgggatagagcagcatgcaagctaattgaggacagtattggatatttagctttgaaatgcaactgaaagatggtctatcattgtccca |
11828972 |
T |
|
| Q |
116 |
aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatgg |
181 |
Q |
| |
|
|| ||||||| |||||||| ||| || ||| ||||||| |||||||| ||||||||||||||||| |
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|
| T |
11828971 |
tatgtcattttcccaccaaccttttagtttaagacaatctgagattgttagttccttcaaggatgg |
11828906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 11828870 - 11828778
Alignment:
| Q |
237 |
caatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcatttgggacagt |
329 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |
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| T |
11828870 |
caataaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctcatccattggtgggagaaattcgcatttgggacagt |
11828778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 11861002 - 11860910
Alignment:
| Q |
237 |
caatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcatttgggacagt |
329 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||| |
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| T |
11861002 |
caatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctgatccattggtgggagaaatttgcaattgggacagt |
11860910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 11732876 - 11732735
Alignment:
| Q |
39 |
ggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattaccccaaatc---tcatttttccaccaac |
135 |
Q |
| |
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|||| ||| |||||||||||||||||| |||| |||||||||||||||||| |||| ||||||| | || | | || ||||||| |||||||| |
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| T |
11732876 |
ggcacgcatgctaatttaggacaacatcggatatttagttttgaaatgcaagggaaagatggtctgttttttttcaatgtcttatcattttcccaccaac |
11732777 |
T |
|
| Q |
136 |
ttttcagattaggacaatccgagattgtaagttccttcaagg |
177 |
Q |
| |
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||| || |||||||||||||| |||||||| |||||||||| |
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| T |
11732776 |
tttcgagtttaggacaatccgaaattgtaagctccttcaagg |
11732735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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