View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19589_high_38 (Length: 329)
Name: NF19589_high_38
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 315
Target Start/End: Complemental strand, 52546298 - 52545986
Alignment:
| Q |
4 |
caataacaaactaataaattaacagcttgaacttttacaatatcgatttgttgctgtcatagtcttcgcattcacacagttagggagggacgtcagtagc |
103 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52546298 |
caataacaaactaataaattatcagctagaacttgtacaatatcgatttgttgcagtcatagtcttcgcattcacacagttagggagggacgtcagtagc |
52546199 |
T |
|
| Q |
104 |
cgttggctcgagattgagttcagtatttcagnnnnnnnaaaataatcaaaatatgtattaaaatttagatcatccaatctcaatccaacagccactgaca |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52546198 |
cgttggctcgagatcgagttcagtatttcagtttttttaaaataatcaaaatatgtattaaaatttagatcatccaatctcaatccaacagccaccgaca |
52546099 |
T |
|
| Q |
204 |
tctctgactacttgaatacgtggatatttaaccacagcaaatccaaattggtgcactatagacatcttctgatgaaatatttatta-tacttttgatact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52546098 |
tctctgactacttgaatacgtggatatttaaccacagcaaatccaaattggtgcactatagacatcttctgatgaaatatttattagtacttttgatact |
52545999 |
T |
|
| Q |
303 |
catgagttaattt |
315 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
52545998 |
cgtgagttaattt |
52545986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 37846455 - 37846405
Alignment:
| Q |
142 |
aaaataatcaaaatatgtattaaaatttagatcatccaatctcaatccaac |
192 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
37846455 |
aaaaaaatcaaaatatgtattaaaaattagatcttcgaatctcaatccaac |
37846405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University