View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19589_high_39 (Length: 326)
Name: NF19589_high_39
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 40328763 - 40328600
Alignment:
| Q |
70 |
ataagcgcttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttattt |
169 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40328763 |
ataagcgcttacgtggtagaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttattt |
40328664 |
T |
|
| Q |
170 |
cctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40328663 |
cctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
40328600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 10225378 - 10225533
Alignment:
| Q |
78 |
ttacgtggtggaagggctgatgtattcatgcatctttccagaagcaccaaagagaataagggaaacttgagcatcacaaagaacacttatttcctttgct |
177 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||||| | ||| || ||| |||||||||||||||||| |||||| | ||||| || ||| |
|
|
| T |
10225378 |
ttacgtggtagaagggctaatgtattcatgcatttttccagaaggagcaatgatgatagtggaaacttgagcatcacatagaacattgatttctttagct |
10225477 |
T |
|
| Q |
178 |
ttcttaaggattccattctttctctttgaataagtaacttgcctgttgcttgagtt |
233 |
Q |
| |
|
||||| | || || | |||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
10225478 |
ttctttaaaatcccgctttttctctttgaatatgtaacttgtctattgcttgagtt |
10225533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 8201190 - 8201113
Alignment:
| Q |
147 |
agcatcacaaagaacacttatttcctttgctttcttaaggattccattctttctctttgaataagtaacttgcctgtt |
224 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||| | || |||||| |||||||||| || || ||||||||||| |
|
|
| T |
8201190 |
agcatcacaaagaacactaagttcatgtgctttcttgaatataccattccttctctttgagtatgtcacttgcctgtt |
8201113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University