View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_46 (Length: 289)
Name: NF19589_high_46
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 45653238 - 45652966
Alignment:
| Q |
1 |
catatttctgctgatttgaaatattatgtttgatttatannnnnnngttacacctattttcttctagggagtatatgcattacttttttgcaagagaagc |
100 |
Q |
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|||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45653238 |
catatttctgctgatttgaaatataatttttgttttatatttttttgttacacctattttcttctagggagtatatgcattacttttttgcaagagaagc |
45653139 |
T |
|
| Q |
101 |
gttcgttctgttggataccgtctagctggatcaatgggaagagtaaggtactcattgttggttatcatgaaacagcttaagctacactagttgcgatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45653138 |
gttcgttctgttggataccgtctagctggatcaatgggaagagtaaggtactcattgttggttatcatgaaacagcttaagctacactagttgcgatttc |
45653039 |
T |
|
| Q |
201 |
atattgtacctgaaagcaatttctctgtgtataaatcccagaaaaagtttttaataatattttatctcaacaat |
274 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
45653038 |
atattgtacctgaaagcaatttctctgtgtatacatcccagaaaaa-attttaataatattttatctcaacaat |
45652966 |
T |
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