View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19589_high_47 (Length: 264)
Name: NF19589_high_47
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 3482999 - 3482743
Alignment:
| Q |
1 |
taataataaaaaggcctatagcccttaacaataagagaattaaaatcttctaggaattaaaatatcaagtttgaaaagctccaccaacggattatttatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
3482999 |
taataataaaaaggcctatagcccttaacaataagagaattaaaatcgtctaggaattaaaatatcaagtttgaaaagctccaccaacgaattatttacc |
3482900 |
T |
|
| Q |
101 |
ctttcactctttttcaactctcaaacaaagtcttaagaaataattatagtttttaactatacttctgatttttatatttgttatcctcactgtgctacga |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3482899 |
cttttactctttttcaactctcaaacaaagtcttaagaaataattgcagtttttaactatacttctgatttttatatttgttatcctcactgtgctacga |
3482800 |
T |
|
| Q |
201 |
tgagtactttcctccacaccactcatttcaacttcaacctttggtgtccgccctttg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3482799 |
tgagtactttcctccacaccactcatttcaacttcaacctttggtgtccgccctttg |
3482743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University