View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_51 (Length: 256)
Name: NF19589_high_51
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 396676 - 396895
Alignment:
| Q |
19 |
agagaggctttctttagttacttttactttgcactcaatgttggatcactcttttccaacaccattttggtttattacgaagataccggtatgtggacat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396676 |
agagaggctttctttagttacttttactttgcactcaatgttggatcactattttccaacaccattttggtttattacgaagataccggtatgtggacat |
396775 |
T |
|
| Q |
119 |
tgggtttcggtgtctccttggcctctgctattatagccttgatttcattcttagcaggatctcgaaaatatcgatatgttaaggcgtatggcaatcctgt |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396776 |
tgggtttcggtgtctccttagcctctgctattatagccttgatttcattcttagcaggatctcgaaaatatcgatatgttaaggcgtatggcaatcctgt |
396875 |
T |
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| Q |
219 |
cataagagtaatccaggtct |
238 |
Q |
| |
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|||||||||||||||||||| |
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| T |
396876 |
cataagagtaatccaggtct |
396895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3803972 - 3803753
Alignment:
| Q |
19 |
agagaggctttctttagttacttttactttgcactcaatgttggatcactcttttccaacaccattttggtttattacgaagataccggtatgtggacat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
3803972 |
agagaggctttctttagttacttttactttgcactcaatgttggatcactcttttccaacaccattttggtttattatgaagattccggtatgtggacat |
3803873 |
T |
|
| Q |
119 |
tgggtttcggtgtctccttggcctctgctattatagccttgatttcattcttagcaggatctcgaaaatatcgatatgttaaggcgtatggcaatcctgt |
218 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||| |
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| T |
3803872 |
tgggtttcggtgtctcgctagcctctgctattatagccttgatttcattcttagcaggatctcgaagatatcgttatgttaaggcgtgtgggaatcctgt |
3803773 |
T |
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| Q |
219 |
cataagagtaatccaggtct |
238 |
Q |
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|||||||||||| ||||||| |
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| T |
3803772 |
cataagagtaattcaggtct |
3803753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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