View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_58 (Length: 245)
Name: NF19589_high_58
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 487551 - 487769
Alignment:
| Q |
14 |
cagagaggctaaaaatatagggagatcattacaagcactgagtcttggctcatctcatcaagattctaatttcaaaatatactct--gtccaaaggattt |
111 |
Q |
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| T |
487551 |
cagagaggctaaaaatatagggagatcattacaagcactgagtcttggctcatctcatcaagattctaatttcagaatatactctatgtccaaaggattt |
487650 |
T |
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| Q |
112 |
atgatttaatgcaggattttctaattcttgattttgtcatatatccaaacttggatcgatatgagggctcaatctacggtgagaaagtgcctcatatctc |
211 |
Q |
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| T |
487651 |
atgatttaatgcaggattttctaattcttgattttgtcatatatccaaacttggatcgatatgagggctcaatctacggtgagaaagtgcctcatatctc |
487750 |
T |
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| Q |
212 |
tccccgtgggcaagttttt |
230 |
Q |
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| T |
487751 |
tccccgtgggcaagttttt |
487769 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 27169444 - 27169517
Alignment:
| Q |
100 |
tccaaaggatttatgatttaatgcaggattttctaattcttgattttgtcatatatccaaacttggatcgatat |
173 |
Q |
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| T |
27169444 |
tccaaaggatttatgacttgctgcaagtttttgtaaatcttgattttgtcatataaccaagcttggatcaatat |
27169517 |
T |
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