View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_6 (Length: 688)
Name: NF19589_high_6
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 46 - 653
Target Start/End: Original strand, 21817430 - 21818025
Alignment:
| Q |
46 |
gcatttctatcttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttta |
145 |
Q |
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| T |
21817430 |
gcatttctatcttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttta |
21817529 |
T |
|
| Q |
146 |
ctaaacagtattgnnnnnnnnncattcttgttagtattttcacgtgtttttccacagaaaaagtctcctcacatttcatgctttgagacatatatataca |
245 |
Q |
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| T |
21817530 |
ctaaacagtattgaaaaaaaa-cattcttgttagtattttcacgtgtttttccacagaaaaagtctcctcacatttcatgctttgagacatata----ca |
21817624 |
T |
|
| Q |
246 |
gaaccaatcaaaaatccattttcatcaagtttatacacatcttgggtttcatctccttgattaaattatattctttctagtttatgtatccttgattacc |
345 |
Q |
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| T |
21817625 |
gaaccaatcaaaaatccattttcatcaagtttatacacatcttggatttcatctccttgattaaattatattctttctagtttatgtatccttgattacc |
21817724 |
T |
|
| Q |
346 |
atcaagaaaagtctgttaaatcgtcgggggttagcatattatacatggaaaatccttgaggaaagcgcgatcagcgcatctcagactatctcaccaattt |
445 |
Q |
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| T |
21817725 |
atcaagaaaagtctgttaaa-------gggttagcatattatacgtggaaaatccttgaggaaagcgcgatcagcgcatctcagactatctcacaaattt |
21817817 |
T |
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| Q |
446 |
tgttttgcagatatttacaccagctttcacaacaaaactaccaggagtcatgtattgattgtctttgtgaatactttctagtatttatctcaattgtcat |
545 |
Q |
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| T |
21817818 |
tgttttgcagatatttacagcagctttcacaacaaaactaccaggagtcatgcattgattgtctttgtgaatactttctagtatttatctcaattgtcat |
21817917 |
T |
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| Q |
546 |
caattgtacactaattatgcatccttttgttagttgtgttatgcgcatatgcttgcaatggagtaaaaattcaacatgagcaaggtgagagaaactatgt |
645 |
Q |
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| T |
21817918 |
caattgtacactaattacgcatcctttggttagttgtgttatgcgcatatgcttgcaatggagtaaaaattcaacatgagcaaggtgagagaaactatgt |
21818017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 21815196 - 21815234
Alignment:
| Q |
16 |
atttacttggtcaatgcctcactaaaacgtgcatttcta |
54 |
Q |
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| T |
21815196 |
atttacttggtcaatgcctcactaaaacgtgcatttcta |
21815234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 219 - 461
Target Start/End: Original strand, 14923326 - 14923567
Alignment:
| Q |
219 |
tttcatgctttgagacatatatatacagaaccaatcaaaaatccattttcatcaagtttatacacatcttgggtttcatctccttgattaaattatattc |
318 |
Q |
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||||||||||| ||||||||| ||||| ||||||| |||||| |||||||||||| | || ||||||||||||||||||| | |||||||||||||||| |
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| T |
14923326 |
tttcatgcttttagacatatacatacataaccaatacaaaatcaattttcatcaagctaatgcacatcttgggtttcatcttcctgattaaattatattc |
14923425 |
T |
|
| Q |
319 |
tttctagtttatgtatccttgattaccatcaagaaaagtctgttaaatcgtcgggggttagcatattatacatggaaaatccttgaggaaagcgcgatca |
418 |
Q |
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| T |
14923426 |
ttgctagttc-tgtatccttgattactatcaagaagagtatgttaaatcatggtgggttagcgtattatacgtggaaaatctttgaggacagcgcgatca |
14923524 |
T |
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| Q |
419 |
gcgcatctcagactatctcaccaattttgttttgcagatattt |
461 |
Q |
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|||| ||||||||| |||| ||||| ||||||||||| ||||| |
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| T |
14923525 |
gcgcgtctcagactttctccccaatcttgttttgcaggtattt |
14923567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 287 - 461
Target Start/End: Original strand, 18337073 - 18337247
Alignment:
| Q |
287 |
ttgggtttcatctccttgattaaattatattctttctagtttatgtatccttgattaccatcaagaaaagtctgttaaatcgtcgggggttagcatatta |
386 |
Q |
| |
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|||| |||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| | |||||||||| ||||| |
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| T |
18337073 |
ttggatttcatcttccagattaaattatattcttgctagtttatgcatccttgattaccatcaagaagagtctgttaaattcttgggggttagcgtatta |
18337172 |
T |
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| Q |
387 |
tacatggaaaatccttgaggaaagcgcgatcagcgcatctcagactatctcaccaattttgttttgcagatattt |
461 |
Q |
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| T |
18337173 |
tacgcggaaaattcttgaggacaacgcgaccatcatgtctcagactatctcaccaattttgttttgtaggtattt |
18337247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 18336860 - 18336944
Alignment:
| Q |
59 |
ttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttt |
144 |
Q |
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| T |
18336860 |
ttgtaaagtggctttaatgtgtaactgattgattttaatttgcaacggattga-ttggcatatatagaaaaacatttttccacttt |
18336944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 461
Target Start/End: Original strand, 19429827 - 19429970
Alignment:
| Q |
317 |
tctttctagtttatgtatccttgattaccatcaagaaaagtctgttaaatcgtcgggggttagcatattatacatggaaaatccttgaggaaagcgcgat |
416 |
Q |
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| T |
19429827 |
tcttgctagtttctgtatccttggttacttctaagaagggtctgttaaatact-gggggttagcattctacacgcggaaaatccttgaggacagcgtgat |
19429925 |
T |
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| Q |
417 |
cagcgcatctcagactatctcaccaattttgttttgcagatattt |
461 |
Q |
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| T |
19429926 |
cagcacgtctcaaactttttcattaattttgttttgcaggtattt |
19429970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 239 - 340
Target Start/End: Complemental strand, 13274695 - 13274594
Alignment:
| Q |
239 |
atatacagaaccaatcaaaaatccattttcatcaagtttatacacatcttgggtttcatctccttgattaaattatattctttctagtttatgtatcctt |
338 |
Q |
| |
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||||||| || |||| |||||| |||||||||||| | |||||||| ||||||||||||| | ||| ||||||||||||| ||||||| ||||||||| |
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| T |
13274695 |
atatacataaacaatacaaaatcaattttcatcaagctaatacacattttgggtttcatcttcctgaagaaattatattcttgctagtttctgtatcctt |
13274596 |
T |
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| Q |
339 |
ga |
340 |
Q |
| |
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|| |
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| T |
13274595 |
ga |
13274594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 16463736 - 16463774
Alignment:
| Q |
16 |
atttacttggtcaatgcctcactaaaacgtgcatttcta |
54 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16463736 |
atttacttggtcaatgcctcactaaaacgtgcatttcta |
16463774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 454
Target Start/End: Complemental strand, 42312960 - 42312929
Alignment:
| Q |
423 |
atctcagactatctcaccaattttgttttgca |
454 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42312960 |
atctcagactatctcaccaattttgttttgca |
42312929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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