View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_high_67 (Length: 227)
Name: NF19589_high_67
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_high_67 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 34700535 - 34700726
Alignment:
| Q |
16 |
ataatactagagaaacatatatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtcca |
115 |
Q |
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| T |
34700535 |
ataataatagagaaacatatatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtcca |
34700634 |
T |
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| Q |
116 |
gaaataacttgtcgtggtagtggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcatctcttcctttaggatcatt |
207 |
Q |
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| T |
34700635 |
gaaataacttgtcgtggtagtggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcatctcttcctttaggatcatt |
34700726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 34718154 - 34718071
Alignment:
| Q |
35 |
tatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaa |
118 |
Q |
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| T |
34718154 |
tatacctgttcaagagttgtgaagttatcttgaatcaaagcatacttcatgagaggtttcttggtatttgaactttgtccagaa |
34718071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 26998527 - 26998698
Alignment:
| Q |
37 |
tacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcgtggtagt |
136 |
Q |
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| T |
26998527 |
tacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcgtggtagt |
26998626 |
T |
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| Q |
137 |
ggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcatctcttcctttaggatcattc |
208 |
Q |
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| T |
26998627 |
ggtaatgggacaggtttgtgaattggaaaattagatgaagagattctttcatctcttcctttaggatcattc |
26998698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 27062175 - 27062017
Alignment:
| Q |
30 |
acatatatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcg |
129 |
Q |
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| T |
27062175 |
acatatatacctgttcaagagtagtgaaattatcatgaatcaaagcatacttcttggaaggttgcttagtgtttgaacattgtccagaaataatttctgg |
27062076 |
T |
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| Q |
130 |
tggtagtggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcat |
188 |
Q |
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| T |
27062075 |
tggaagtggtaatgggacaggtttctgagttggaaaattgggcgaagagattatttcat |
27062017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 27010863 - 27010780
Alignment:
| Q |
35 |
tatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaa |
118 |
Q |
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| T |
27010863 |
tatacctgttcaagagttgtgaagttatcttgaatcaaagcatacttcttgagaggtttcttggtgtttgaactttgtccagaa |
27010780 |
T |
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