View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19589_low_1 (Length: 1175)

Name: NF19589_low_1
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19589_low_1
NF19589_low_1
[»] chr6 (35 HSPs)
chr6 (626-915)||(31565162-31565451)
chr6 (208-494)||(31564838-31565117)
chr6 (957-1158)||(31565454-31565655)
chr6 (297-561)||(33414524-33414788)
chr6 (626-792)||(33414293-33414459)
chr6 (322-561)||(33269497-33269740)
chr6 (18-149)||(31564712-31564843)
chr6 (297-561)||(33395008-33395274)
chr6 (297-524)||(33258187-33258416)
chr6 (626-782)||(33383760-33383916)
chr6 (68-294)||(33259583-33259812)
chr6 (390-561)||(33383981-33384156)
chr6 (102-294)||(33416152-33416345)
chr6 (18-294)||(33385314-33385580)
chr6 (651-782)||(33351400-33351530)
chr6 (295-467)||(33278972-33279139)
chr6 (109-294)||(24631975-24632161)
chr6 (626-736)||(33292802-33292912)
chr6 (954-1065)||(33413910-33414021)
chr6 (297-401)||(33293090-33293194)
chr6 (665-768)||(33258067-33258170)
chr6 (460-550)||(33292988-33293078)
chr6 (808-964)||(33414090-33414254)
chr6 (630-702)||(33269355-33269427)
chr6 (68-250)||(9165228-9165418)
chr6 (954-1036)||(33351038-33351120)
chr6 (796-934)||(33351212-33351363)
chr6 (340-464)||(33280358-33280482)
chr6 (65-139)||(29274300-29274376)
chr6 (652-692)||(31567428-31567468)
chr6 (297-343)||(28873045-28873091)
chr6 (1089-1139)||(33413817-33413867)
chr6 (208-249)||(33282241-33282282)
chr6 (208-249)||(33398042-33398083)
chr6 (208-249)||(33408952-33408993)
[»] chr2 (9 HSPs)
chr2 (297-518)||(17447760-17447982)
chr2 (626-792)||(17445747-17445910)
chr2 (810-886)||(17445951-17446026)
chr2 (954-1028)||(17446159-17446233)
chr2 (489-561)||(17445607-17445679)
chr2 (65-146)||(34339039-34339122)
chr2 (98-138)||(3102617-3102657)
chr2 (1076-1140)||(17446284-17446348)
chr2 (65-126)||(7103554-7103615)
[»] scaffold0428 (7 HSPs)
scaffold0428 (297-524)||(2308-2537)
scaffold0428 (295-467)||(15114-15281)
scaffold0428 (665-768)||(2188-2291)
scaffold0428 (41-164)||(3802-3934)
scaffold0428 (340-464)||(13771-13895)
scaffold0428 (208-294)||(3704-3791)
scaffold0428 (208-249)||(11970-12011)
[»] chr5 (5 HSPs)
chr5 (18-139)||(11684346-11684467)
chr5 (65-146)||(32059660-32059742)
chr5 (18-63)||(30653393-30653438)
chr5 (102-146)||(10391269-10391313)
chr5 (107-146)||(29115328-29115367)
[»] chr3 (3 HSPs)
chr3 (68-146)||(38462197-38462277)
chr3 (66-139)||(22232749-22232824)
chr3 (73-155)||(3015928-3016011)
[»] chr1 (1 HSPs)
chr1 (83-136)||(44207697-44207750)
[»] scaffold0024 (1 HSPs)
scaffold0024 (51-124)||(21335-21410)
[»] chr8 (5 HSPs)
chr8 (73-141)||(26717178-26717246)
chr8 (51-137)||(5290566-5290649)
chr8 (83-146)||(26716527-26716590)
chr8 (46-99)||(10079115-10079168)
chr8 (65-139)||(34788498-34788574)
[»] chr7 (3 HSPs)
chr7 (65-146)||(3610811-3610894)
chr7 (102-180)||(22388014-22388093)
chr7 (18-138)||(26935574-26935696)
[»] chr4 (3 HSPs)
chr4 (83-137)||(32920489-32920543)
chr4 (73-140)||(47970240-47970309)
chr4 (53-123)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 626 - 915
Target Start/End: Original strand, 31565162 - 31565451
Alignment:
Q  626 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565162 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 31565261  T
Q  726 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 825  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565262 aagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 31565361  T
Q  826 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 915  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565362 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 31565451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 208 - 494
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  208 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 307  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  308 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  408 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 957 - 1158
Target Start/End: Original strand, 31565454 - 31565655
Alignment:
Q  957 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctttga 1056  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31565454 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagccactctttga 31565553  T
Q  1057 ttacagtatacaaatattgtgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacatgagt 1156  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565554 ttacagtatacaaatattgtgaaatttactctataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacatgagt 31565653  T
Q  1157 tt 1158  Q
    ||    
T  31565654 tt 31565655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 297 - 561
Target Start/End: Complemental strand, 33414788 - 33414524
Alignment:
Q  297 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 396  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  397 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 496  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  497 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||    
T  33414588 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaag 33414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 6e-65
Query Start/End: Original strand, 626 - 792
Target Start/End: Complemental strand, 33414459 - 33414293
Alignment:
Q  626 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 725  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  33414459 ttgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagacttggtgaggca 33414360  T
Q  726 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 792  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||| |||||||||    
T  33414359 aagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactctcggagaaaca 33414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 322 - 561
Target Start/End: Complemental strand, 33269740 - 33269497
Alignment:
Q  322 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 417  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  418 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 517  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T
Q  518 agtttgtatctattgaagatattcctaaaaccactgtgacgaag 561  Q
    |||||||||||||||||||||||||  |||| | ||||||||||    
T  33269540 agtttgtatctattgaagatattcccgaaactattgtgacgaag 33269497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 31564712 - 31564843
Alignment:
Q  18 gttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttat 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  31564712 gttttcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgacttcattttatcttgttataaaaatagcttat 31564811  T
Q  118 acataagcaattttatgataagtgtttatctt 149  Q
    ||||| ||||||||||||||||||||||||||    
T  31564812 acatatgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 297 - 561
Target Start/End: Complemental strand, 33395274 - 33395008
Alignment:
Q  297 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 396  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  397 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 494  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  495 agttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 561  Q
    |   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |||||||    
T  33395074 ataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaag 33395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 297 - 524
Target Start/End: Complemental strand, 33258416 - 33258187
Alignment:
Q  297 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 395  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  396 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 495  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  496 gttgctgctt-gtccacaggttcagtttgt 524  Q
    || |||  || |||||||||||||||||||    
T  33258216 gtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 626 - 782
Target Start/End: Complemental strand, 33383916 - 33383760
Alignment:
Q  626 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 725  Q
    ||||||||||||||||||||||||| |||  ||| || |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  33383916 ttgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaagacttggtgaggca 33383817  T
Q  726 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactct 782  Q
    |||||||||||||||||||||||||||||  |   ||||||||||||||||||||||    
T  33383816 aagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttcactct 33383760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 33259812 - 33259583
Alignment:
Q  68 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 165  Q
    ||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||| || ||||  |||   ||||||| ||||||| |||||||    
T  33259812 tataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttatacataagcacttatatgtaaagctcttatcttataagcttgaattagg 33259713  T
Q  166 ttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-cccttt 264  Q
     | ||||||||||| | ||||||| |||| |||||  | || |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||    
T  33259712 ctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgcccttt 33259613  T
Q  265 gaattgcagcaactatatcaccaacacttg 294  Q
    | ||||||||||||||||||||| ||||||    
T  33259612 ggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 390 - 561
Target Start/End: Complemental strand, 33384156 - 33383981
Alignment:
Q  390 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 489  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  490 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 561  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaag 33383981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 33416345 - 33416152
Alignment:
Q  102 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 201  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  202 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 294  Q
    |||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 33385580 - 33385314
Alignment:
Q  18 gttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt--gctataaaaatagctt 115  Q
    ||||||||||| ||||| ||   ||||||||||||||||||||||| |||||||| | ||  ||||||||||||||||||||  | ||||||||| ||||    
T  33385580 gttttcagcttttttccataaactgtctagaaaagcttatgaaaatagcttatagcataa--gtatgacttcattttatcttttgttataaaaattgctt 33385483  T
Q  116 atacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttg 215  Q
    |||||| |||| || ||||  ||||| ||||||| |||| ||| |||||| | ||||||           |||| |||| ||||||||||||||||||||    
T  33385482 atacatcagcacttatatgtaaagtgcttatcttataagttttcattaggctgtttatc-----------ttaggtttccagcctgttcacctatctttg 33385394  T
Q  216 aattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 294  Q
    |||||||||||||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33385393 aattcttacataagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 651 - 782
Target Start/End: Complemental strand, 33351530 - 33351400
Alignment:
Q  651 attaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaac 750  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  33351530 attaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaac 33351432  T
Q  751 attactgtgcggcgttttgttcggttcactct 782  Q
    ||||  | ||||||||||||||||||||||||    
T  33351431 attaaagcgcggcgttttgttcggttcactct 33351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 295 - 467
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  295 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 394  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  395 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 467  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 109 - 294
Target Start/End: Original strand, 24631975 - 24632161
Alignment:
Q  109 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 208  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  209 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 294  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 626 - 736
Target Start/End: Complemental strand, 33292912 - 33292802
Alignment:
Q  626 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 725  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||   | |||||||||| ||||||    
T  33292912 ttgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaagacttggagaggca 33292813  T
Q  726 aagtatagctg 736  Q
    |||||||||||    
T  33292812 aagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 954 - 1065
Target Start/End: Complemental strand, 33414021 - 33413910
Alignment:
Q  954 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctt 1053  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| ||  | ||||| |||||||    
T  33414021 aggtttgaattgtttgtttcattaattcttgacatttgttacttatcatgtaaatgataataatcattaatcattgatctgtttgaagataggcactctt 33413922  T
Q  1054 tgattacagtat 1065  Q
    || ||| |||||    
T  33413921 tgcttatagtat 33413910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 297 - 401
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  297 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 396  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  397 gattc 401  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 665 - 768
Target Start/End: Complemental strand, 33258170 - 33258067
Alignment:
Q  665 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 764  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 33258071  T
Q  765 tttt 768  Q
    ||||    
T  33258070 tttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 460 - 550
Target Start/End: Complemental strand, 33293078 - 33292988
Alignment:
Q  460 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 550  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  |||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaacca 33292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 808 - 964
Target Start/End: Complemental strand, 33414254 - 33414090
Alignment:
Q  808 gttttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaa---------tcataataaccaaa 898  Q
    |||||||||| ||||| | ||||||||||||||||||||||||| |  |||||||||| |||||||| |||||||||         ||||||||||||||    
T  33414254 gttttcaagagaagtaatcgttgcattttcataggaagaagtatgcggcagagtgagaccaattttg-aaacagaaatctgcttcttcataataaccaaa 33414156  T
Q  899 tgttgattagacgccaatacattttactgatatgtatctctatcgaggatagatgaggtctgaatt 964  Q
    |||||||||| |||  | || |||||||||| ||||||| ||| ||||||| |||||| |||||||    
T  33414155 tgttgattaggcgcggacacgttttactgatctgtatctgtattgaggatacatgaggactgaatt 33414090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 630 - 702
Target Start/End: Complemental strand, 33269427 - 33269355
Alignment:
Q  630 tgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgtt 702  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  33269427 tgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 68 - 250
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  68 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 165  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  166 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 250  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 954 - 1036
Target Start/End: Complemental strand, 33351120 - 33351038
Alignment:
Q  954 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctatt 1036  Q
    |||| ||||||||||||||||||||||||| |||||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  33351120 aggtttgaattgtttgtttcattaattcttgacatttgttactactattgtaaaggataataatcattaatcattgatctatt 33351038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 796 - 934
Target Start/End: Complemental strand, 33351363 - 33351212
Alignment:
Q  796 atagcttaaaaagttttcaagaaaagtatttgt---tgcattttcataggaagaagtatacaacagagtgagatcaa-ttttgaaaacagaaa------- 884  Q
    |||||||| || | |||||||| ||||||||||   ||||||||||||||||||||||| |  | |||||||||||| |||||||||||||||           
T  33351363 atagcttacaacgctttcaagacaagtatttgtctttgcattttcataggaagaagtatgctgcggagtgagatcaatttttgaaaacagaaatcttgtt 33351264  T
Q  885 --tcataataaccaaatgttgattagacgccaatacattttactgatatgta 934  Q
      |||||||||||||||||||||||| |||  | ||||||||||||| ||||    
T  33351263 cttcataataaccaaatgttgattaggcgcggacacattttactgatctgta 33351212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 340 - 464
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  340 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 439  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  440 actttatcggtagaagtgagaaatt 464  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  65 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 139  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 692
Target Start/End: Original strand, 31567428 - 31567468
Alignment:
Q  652 ttaggagagcttgctcttctagagcagcctttcattaagga 692  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31567428 ttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  297 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 343  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1089 - 1139
Target Start/End: Complemental strand, 33413867 - 33413817
Alignment:
Q  1089 ataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagt 1139  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  33413867 ataagttatgcgtatatctaagaagtggaagcttaaagggagcgataaagt 33413817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  208 tatctttgaattcttacataaggtttgtaatttttaaatgtc 249  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  208 tatctttgaattcttacataaggtttgtaatttttaaatgtc 249  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  208 tatctttgaattcttacataaggtttgtaatttttaaatgtc 249  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 3e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 297 - 518
Target Start/End: Original strand, 17447760 - 17447982
Alignment:
Q  297 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 395  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  396 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 495  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  496 gttgctgcttgtccacaggttca 518  Q
    || ||||||| ||||||||||||    
T  17447960 gtggctgcttttccacaggttca 17447982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 626 - 792
Target Start/End: Original strand, 17445747 - 17445910
Alignment:
Q  626 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 725  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||    
T  17445747 ttgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggca 17445846  T
Q  726 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 792  Q
    |||||||||||| ||||| |||    |||  ||||||||||||||| |||||||||  |||||||||    
T  17445847 aagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttcactcccggagaaaca 17445910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 810 - 886
Target Start/End: Original strand, 17445951 - 17446026
Alignment:
Q  810 tttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatc 886  Q
    |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  17445951 tttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttg-aaacagaaatc 17446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 954 - 1028
Target Start/End: Original strand, 17446159 - 17446233
Alignment:
Q  954 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcatt 1028  Q
    |||| |||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||    
T  17446159 aggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcatt 17446233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 489 - 561
Target Start/End: Original strand, 17445607 - 17445679
Alignment:
Q  489 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 561  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaag 17445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  65 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 146  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  98 ttgctataaaaatagcttatacataagcaattttatgataa 138  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1076 - 1140
Target Start/End: Original strand, 17446284 - 17446348
Alignment:
Q  1076 tgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagtt 1140  Q
    |||||||| || |||||||||||| |||||||   ||||| ||||||||||||||| ||||||||    
T  17446284 tgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaaggaagcaataaagtt 17446348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  65 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 126  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 5e-50; HSPs: 7)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 297 - 524
Target Start/End: Complemental strand, 2537 - 2308
Alignment:
Q  297 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 395  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  396 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 495  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  496 gttgctgctt-gtccacaggttcagtttgt 524  Q
    || |||  || |||||||||||||||||||    
T  2337 gtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 295 - 467
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  295 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 394  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  395 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 467  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 665 - 768
Target Start/End: Complemental strand, 2291 - 2188
Alignment:
Q  665 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 764  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 2192  T
Q  765 tttt 768  Q
    ||||    
T  2191 tttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 3934 - 3802
Alignment:
Q  41 tgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaatttt 131  Q
    ||||||||||||||||||||||| ||||||||       |||||||||||||||||| ||||||  ||| ||||||||||||||| ||||||||| || |    
T  3934 tgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttacacataagcacttat 3835  T
Q  132 atgataagtgtttatcttgtaagctttaattag 164  Q
    |||  ||| | ||||||| ||||||| ||||||    
T  3834 atgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 340 - 464
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  340 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 439  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  440 actttatcggtagaagtgagaaatt 464  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  208 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 294  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  208 tatctttgaattcttacataaggtttgtaatttttaaatgtc 249  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 11684467 - 11684346
Alignment:
Q  18 gttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttat 117  Q
    ||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| ||||||||||||||||    
T  11684467 gttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagcttat 11684368  T
Q  118 acataagcaattttatgataag 139  Q
    |||| |||| || |||||||||    
T  11684367 acattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  65 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 146  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 30653393 - 30653438
Alignment:
Q  18 gttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 63  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  30653393 gttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  102 tataaaaatagcttatacataagcaattttatgataagtgtttat 146  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  107 aaatagcttatacataagcaattttatgataagtgtttat 146  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  68 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 146  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  66 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 139  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  73 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 155  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  83 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 136  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  51 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 124  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  73 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 141  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  51 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 137  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  83 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 146  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 10079115 - 10079168
Alignment:
Q  46 agaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 99  Q
    |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079115 agaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  65 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 139  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  65 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 146  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  102 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 180  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 26935574 - 26935696
Alignment:
Q  18 gttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagctt 115  Q
    ||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| ||||||||||||||    
T  26935574 gttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagctt 26935673  T
Q  116 atacataagcaattttatgataa 138  Q
    | ||| ||||| || ||||||||    
T  26935674 acacaaaagcacttatatgataa 26935696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  83 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 137  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  73 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 140  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  53 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 123  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

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