View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_11 (Length: 584)
Name: NF19589_low_11
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 15 - 579
Target Start/End: Original strand, 1171755 - 1172319
Alignment:
| Q |
15 |
atattgtgcaattggtggtagctatctgttatga--tatggaaggtgaggaataaaggtgctttgaaggaattgatatgcctaatgctctttctgtgtgt |
112 |
Q |
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| T |
1171755 |
atattgtgcaattggtggtagctatctgttatgagatatggaaggtgaggaataaaggtgctttgaaggaattgatatgcctaatgctct--ctgtgtgt |
1171852 |
T |
|
| Q |
113 |
aacagtgcaattaaagcaattcatgaatttaattcaattgatgccttgctattgtgttcagtaataaatcctattccagttccgatacttatcagcagtg |
212 |
Q |
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| T |
1171853 |
aacagtgcaattaaagcaattcatgaattaaattcaattgatgccttgctattgtgttcagtaataaatcctattccagttccg----gtatcggcagtg |
1171948 |
T |
|
| Q |
213 |
cgttggactccacctataggaaattctttcaagatgaatgtagatgcagctggaccgaatagtgacgggaagtggggatttagcagcggttatccgagac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1171949 |
cgttggactccacctataggaaattctttcaagatgaatgtagatgcagctggaccgaatagtgacgggaagtggggatttagcagcggttatccgaaac |
1172048 |
T |
|
| Q |
313 |
acagaaggtgtcgttgttgcagcgcagtgctggtgcatattggcactgccagattcaaatgtggctgagggtttggctttacctaaggggttggaatttg |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
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| T |
1172049 |
acagaaggcgtcgttgttgcagcgcagtgctggtgcatattggcactgccagattcaaatgtagctgaaggtttggctttacttaaggggttggaatttg |
1172148 |
T |
|
| Q |
413 |
caaaggatatgttgtttcta----aagttgattgtagaatcagattcatttcacatcatcacttgcatcaatgaaaatcaacgccaactctcttatttgg |
508 |
Q |
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| T |
1172149 |
caaaggatatgttgtttctaaattaagttgattgtagaatcagattcatttaacatcatcacttgcatcaatgaaaatcaacgccaactctcttatttgg |
1172248 |
T |
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| Q |
509 |
gatcaatcgttgaagactgcaaaatgttcctttcaagttttcaaaggttagaattttgccatattcttcga |
579 |
Q |
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| T |
1172249 |
gatcaatcgttgaagactgcaaaatgttcctttcaagttttcaaaggttagaattttgccatgttcgtcga |
1172319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 202 - 530
Target Start/End: Complemental strand, 24704171 - 24703845
Alignment:
| Q |
202 |
tatcagcagtgcgttggactccacctataggaaattctttcaagatgaatgtagatgcagctggaccgaatagtgacgggaagtggggatttagcagcgg |
301 |
Q |
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||||||||||||| ||||| |||||| |||| |||||||||||| ||||||| || | |||||| | ||||||||||| || |||| ||| |||||||| |
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| T |
24704171 |
tatcagcagtgcggtggacaccacctgtaggtaattctttcaagttgaatgtggacgtagctggtcagaatagtgacgaaaaatgggaatt-agcagcgg |
24704073 |
T |
|
| Q |
302 |
ttatccgagacacagaaggtgtcgttgttgcagcgcagtgctggtgcatattggcactgccagattcaaatgtggctgagggtttggctttacctaaggg |
401 |
Q |
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|||| ||| ||||||||||| | |||||||||| | ||||||| ||||||||||| || ||| ||| || |||| || ||||||| || | |||||| |
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| T |
24704072 |
ttattcgatacacagaaggtatggttgttgcagtgaagtgctgttgcatattggcgtcgcaagagtcagatatggcagaaggtttgg-attgcttaaggg |
24703974 |
T |
|
| Q |
402 |
gttggaatttgcaaaggatatgttgtttctaaagttgattgtagaatcagattcatttcacatcatcacttgcatcaatgaaaatcaacgccaactctct |
501 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| || | |||||||| | | | ||||| | ||||||||| | | ||| ||||| | |
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| T |
24703973 |
attggaatttgcaaaggatatgttgtttctaaagctgattgttgagttagattcatctaatgtgatcacctccatcaatgagacttaacaccaacagttc |
24703874 |
T |
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| Q |
502 |
tatttgggatcaatcgttgaagactgcaa |
530 |
Q |
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| T |
24703873 |
tatttgggatcaatcgtggaagactgcaa |
24703845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 474 - 579
Target Start/End: Complemental strand, 14930531 - 14930428
Alignment:
| Q |
474 |
catcaatgaaaatcaacgccaactctcttatttgggatcaatcgttgaagactgcaaaatgttcctttcaagttttcaaaggttagaattttgccatatt |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||| || |
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| T |
14930531 |
catcaatgaaaatcaacgccaactctcttatttgggatcaatcgttgaagaccgcaaaaggttcatttcaagttttcaaaggtt--aattttgccatgtt |
14930434 |
T |
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| Q |
574 |
cttcga |
579 |
Q |
| |
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| |||| |
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| T |
14930433 |
cgtcga |
14930428 |
T |
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