View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_20 (Length: 486)
Name: NF19589_low_20
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 304 - 469
Target Start/End: Complemental strand, 11363990 - 11363825
Alignment:
| Q |
304 |
ttgttgcttctaatctccaagcggttgaatttgagacttctagcaaagtttaaagagacttatgttatcacatctgatctaatctacactcgaagatgat |
403 |
Q |
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| T |
11363990 |
ttgttgcttctaatcttcaagcggttgaatttgagacttctagcaaagtttaaagagacttatgttatcacatctgatctaatctacactcgaatatggt |
11363891 |
T |
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| Q |
404 |
ttgcattttagttgtatatgtagatcgatgaagcgacaatcacaaggggttcgacccatgattcct |
469 |
Q |
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| T |
11363890 |
ttgcatttcatttgtatatgtaaatcgatgaagcgacaatcacaaggggttcgacccatgattcct |
11363825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 11364867 - 11364664
Alignment:
| Q |
17 |
aaaataaaatttattaatttagtggtccac-tataacctatgctacaccgtggaaattctaattttcattccttgtttgaattgtcaaacaaatctcata |
115 |
Q |
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| T |
11364867 |
aaaataaaatttattaatttagtggtccacctgccacctatgctacaccgtggaa-------ttgtcattccttgtttaaattgtcaaa----tctcata |
11364779 |
T |
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| Q |
116 |
ctcaatcaaatgcatcagctctttacaagtaccttgagcgtgaaggcttgaatttgacttttgtgtttacgtattatcataaagtttttctctataagct |
215 |
Q |
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| T |
11364778 |
----atcaaatgcatcagctctt-acatgtaccttaagcgcgaaggcttgaatttgacttttgagtttacgtattatcacaaagttttcctctataagct |
11364684 |
T |
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| Q |
216 |
actggtatttttcattgagt |
235 |
Q |
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| T |
11364683 |
actgctatttttcattgagt |
11364664 |
T |
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