View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_21 (Length: 481)
Name: NF19589_low_21
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 44299695 - 44299251
Alignment:
| Q |
19 |
ccctaatcatcaataaaaatacccaacacacacaacacattcaccatctccttcaagtgcaacaaagtaatttcatccaatttcaattcaaaacaataac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44299695 |
ccctaatcatcaataaaaatacccaacacacacaacacattcaccatctccttcaagtgcaacaaagtaatttaatccaatttcaattcaaaacaataac |
44299596 |
T |
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| Q |
119 |
ata-tgccatctataaaacctcgtatcgtaacaacctttttaatcactcacatcatcatnnnnnnnnnnnnnnnnacacaaccccactttagttaggttg |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
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| T |
44299595 |
ataatgccatctataaaacctcgtatcgtaacaacctttttactcactcacatcatcattgtctctctctct----cacaaccccactttagttacgttg |
44299500 |
T |
|
| Q |
218 |
tttcttccatgcataacaatatggcaagattaaacaaccctagcattttagttacaatcattttgtttctattagtaacattaccatttgcctcatgtga |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44299499 |
tttcttccatgcataacaatatggcaagattaaataaccctagcattttagttacaatcattttgtttctattagtaacattaccatttgcctcatgtga |
44299400 |
T |
|
| Q |
318 |
atcagagtgctcgtccaaatatgaaggtgtatgtcacaacaaaaatgaagcactaaagctaaaattaattgcaatattttccatattagtgacgagcatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44299399 |
atcagagtgctcgtccaaatatgaaggtgtatgtcacaacaaaaatgaagcactaaagctaaaattaattgcaatattttccatattagtgacgagcatg |
44299300 |
T |
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| Q |
418 |
attggaatttgtattccaattttcacaacttcgatcccagcgttaaaac |
466 |
Q |
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| T |
44299299 |
attggaatttgtattccaattttcacaacttcgatcccagcattaaaac |
44299251 |
T |
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