View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_22 (Length: 469)
Name: NF19589_low_22
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 232 - 449
Target Start/End: Original strand, 8048533 - 8048738
Alignment:
| Q |
232 |
acatgcacattcacatgacctattgttcttgtgaaggtttcaaaattttggccgcaattacttggaaatttctcatgataaccccttctttggagagatt |
331 |
Q |
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| T |
8048533 |
acatgcacattcacatgacctattgttcttgtgaaggtttcaaaattttggccgcaattacttggaaatttctcatgataaccccttctttggagagatt |
8048632 |
T |
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| Q |
332 |
gaaggactaataggagacatacagataacagcagcccaagtggcagaggaattgatgaagaacgaagccgccaaggcgacactcgaaggatttgtgaaat |
431 |
Q |
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| T |
8048633 |
gaaggactaataggagacat------------agcacaagtggcagaggaattgatgaagaacgaagccgccaaggcgacactcgaaggatttgtgaaat |
8048720 |
T |
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| Q |
432 |
tacttaagaagaagaaga |
449 |
Q |
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| T |
8048721 |
tacttaagaagaagaaga |
8048738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 8048366 - 8048531
Alignment:
| Q |
9 |
agcaaaggaactagtagttgcaaattaggtccagcctgtcggtccgtttaacctgctattttaggcaggttgggttgaggttttgtacaacaataatact |
108 |
Q |
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| T |
8048366 |
agcaaacgaactagtagttgcaaattaggtccagcctgtcggtccgtttaacctgctattttaggcaggctgggttgaggttttgtacaacaataatact |
8048465 |
T |
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| Q |
109 |
gcaaaaatatgcataaatttcaacaaaattagaatactaaaattatttatagcctcattgattatg |
174 |
Q |
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| T |
8048466 |
gcaaaaatatgcataaatttcaacaaaattagaatactaaaattatttatagcctcattgattatg |
8048531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 228 - 454
Target Start/End: Original strand, 8046230 - 8046457
Alignment:
| Q |
228 |
atggacatgcacattcacatgacctattgttcttgtgaaggtttcaaaattttggccgcaat-tacttggaaatttctcatgataaccccttctttggag |
326 |
Q |
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| T |
8046230 |
atggacatgcacattcacatgtcttattgttcttatgaaggtttcaaaattttagcttcaaactacttggatatttcccatgataaccctttctttggag |
8046329 |
T |
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| Q |
327 |
agattgaaggactaataggagacatacagataacagcagcccaagtggcagaggaattgatgaagaacgaagccgccaaggcgacactcgaaggatttgt |
426 |
Q |
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| T |
8046330 |
agattgaaggactaattgaagacatacaaataacacctgcacaagttgccgaggaattgatgaagaacgaagacgcggaggcgacgctggaaggatttgt |
8046429 |
T |
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| Q |
427 |
gaaattacttaagaagaagaagatggaa |
454 |
Q |
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| T |
8046430 |
gaagttgttgaagaggaagaaaatggaa |
8046457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 8046088 - 8046139
Alignment:
| Q |
181 |
tgatagatggatgcagttgacaatatcttgattactgaacttcatagatgga |
232 |
Q |
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| T |
8046088 |
tgatggatggatgcagttgacactatctggattattgaactttatagatgga |
8046139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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