View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19589_low_23 (Length: 463)
Name: NF19589_low_23
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Complemental strand, 34959418 - 34958981
Alignment:
| Q |
12 |
ataggtatgggcttattaattatgtatagaaaacattnnnnnnntcatgtgctaagaataatgacgtatgaggnnnnnnn-tacttttaattcaaacaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34959418 |
ataggtatgggcttattaattatgtatagaaaacattgggggggtcatgtgctaagaataatgacgtatgaggaaaaaaaatacttttaattcaaacaaa |
34959319 |
T |
|
| Q |
111 |
atttaaccatactaaaaaccttctatttttaaaatctttgggctcttagctagcacatgtaagtgattccattacctatgggacactcagtactatgata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34959318 |
atttaaccatactaaaaaccttctatttttaaaatctttgggctcttagctagcacatgtaagtgattccattacctatgggacactcagtactatgata |
34959219 |
T |
|
| Q |
211 |
gctcaaatcaatataaagaatacataaagagtaactttaatttcattgccttggattctaatttatatgtcaatgaaatcatgtggtttttgagtattat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34959218 |
gctcaaatcaatataaagaatacataaagagtaactttaatttcattgccttggattctaatttatatgtcaatgaaatcatgtggtttttgagtattat |
34959119 |
T |
|
| Q |
311 |
tgactcaagcacaatatgtttttaaatttccatactcataatttgcgcctcaattgaagctaatttttagttata-nnnnnnnaccactaaaaaagaaaa |
409 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34959118 |
tgactcaagcacaatatggttttaaatttccatactcataatttgcgcctcaattgaagctaatttttagttatattttttttaccactaaaaaagaaaa |
34959019 |
T |
|
| Q |
410 |
tctttacaatttctacatgaaatttaggaccatgcata |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34959018 |
tctttacaatttctacatgaaatttaggaccatgcata |
34958981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University