View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_24 (Length: 455)
Name: NF19589_low_24
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 46684503 - 46684915
Alignment:
| Q |
12 |
attctcattgtgcttaaaatcatggtattcgataactttttgctgaagaaacttgtgtgtaatactaaaaatttagcttagcaaatttggagtgcaagaa |
111 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46684503 |
attctcattgtgttaaaaatcatggtattcgataactttttgctgaagaaacttgtgtgtaatactaaaaatttagcttagcaaatttggagtgcaagaa |
46684602 |
T |
|
| Q |
112 |
tttttgtttagccaagcgtttacacacatcgattttctgtcgccatatcatacattttgaatgtctttttgaggcagttttttccgtcaaatgcagnnnn |
211 |
Q |
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| T |
46684603 |
tttttgtttagccaagcgtttacacacgtcgattttctgtcgccatatcgtacattttgaatgtctgtttgaggcagtttttt----------------- |
46684685 |
T |
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| Q |
212 |
nnncgtcaattttgtcagcgacattagtgttggcagcaactataaatacgtggtctcactgtgctgtcaaagtttacctttgacctataattagtgttgt |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46684686 |
--tcgtcaattttgtcagcaacattagtgttggcagcaactataaataggtggtctcactgtgctgtcaaagtttacctttgacctataattagtgttgt |
46684783 |
T |
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| Q |
312 |
gtcatttgccaaatcactgaaattggcaaatcaccctaaacatataacaaccaagacaaatttgacagacacaagcgcaaaactgatgaaaaagactaaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46684784 |
gtcatttgccaaatcactgaaattggcaaatcaccctaaacatataacaaccaagacaaatttgacagacgcaagcgcaaaactgatgaaaaagactaaa |
46684883 |
T |
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| Q |
412 |
atgtataacgcttgaaatttaaagaactaaat |
443 |
Q |
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| T |
46684884 |
atgtataacgcttgaaatttaaagaactaaat |
46684915 |
T |
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