View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_27 (Length: 428)
Name: NF19589_low_27
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 6476664 - 6477061
Alignment:
| Q |
8 |
ggacatcatcagtattattcaacttatgtttcatgcttgatttaattgttattgcataacaacatacgctgcctcccatttgccggtgaagaaagtataa |
107 |
Q |
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| T |
6476664 |
ggacgtcatcagtattattcaacttatgtttcatgcttgatttaattgttattgcataacaacatacgctgcctcccatttgccggtgaagaaagtataa |
6476763 |
T |
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| Q |
108 |
ttcttggtatcgacaatctccccttcccagaatgttactacctataaatcattaaagagaaaggtaatgttagtggtaatatttctttctttcaagaaat |
207 |
Q |
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| T |
6476764 |
ttcttggtatcgacaatctccccttcccagaatgttactacctataaatcattaaagagaaaggtagtgttagtgataatatttctttcttccaagaaat |
6476863 |
T |
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| Q |
208 |
aaacaaccaaagcatgcaggaatagtatatatcgatttaagattacatctaagtaaaacctgatgaacatgttatactctaaaatgaataaaaataattt |
307 |
Q |
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| T |
6476864 |
aaacaaccaaagcatgcaggaatagtatatatcgatttaagattacatctaagtaaaacctgatgaacatgttatactctaaaatgaataaaaataattt |
6476963 |
T |
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| Q |
308 |
gctatatcatccacacgtgggataaaaaagtaaagaaactaatcattgcctggaccatattggtcaccatatcaatataaaaagagaagaatgatcat |
405 |
Q |
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| T |
6476964 |
gctatatcatccacacgtgggataaaaaagtaaagaaactaatcactgcctggaccatattggtcaccatatcaatataaaaagagaagaatgatcat |
6477061 |
T |
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