View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19589_low_3 (Length: 920)

Name: NF19589_low_3
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19589_low_3
NF19589_low_3
[»] chr4 (35 HSPs)
chr4 (17-868)||(10202129-10202969)
chr4 (578-669)||(9268023-9268115)
chr4 (578-669)||(10468724-10468816)
chr4 (578-667)||(3990921-3991011)
chr4 (580-669)||(12585402-12585492)
chr4 (579-654)||(45667232-45667308)
chr4 (578-669)||(49028507-49028599)
chr4 (579-669)||(52677553-52677644)
chr4 (581-669)||(25225793-25225882)
chr4 (577-663)||(9450908-9450995)
chr4 (577-654)||(10286409-10286487)
chr4 (577-667)||(17931287-17931378)
chr4 (576-648)||(9449713-9449786)
chr4 (576-663)||(28451526-28451614)
chr4 (578-667)||(17932121-17932211)
chr4 (576-648)||(28450748-28450821)
chr4 (577-668)||(4437679-4437771)
chr4 (575-661)||(49028260-49028347)
chr4 (572-661)||(36098739-36098829)
chr4 (576-661)||(52677804-52677890)
chr4 (580-668)||(4439018-4439107)
chr4 (578-654)||(12585158-12585235)
chr4 (578-661)||(10468480-10468564)
chr4 (582-669)||(21038119-21038206)
chr4 (576-653)||(21038374-21038450)
chr4 (580-656)||(16067581-16067656)
chr4 (579-648)||(21325695-21325765)
chr4 (578-630)||(12315855-12315907)
chr4 (602-669)||(622082-622149)
chr4 (580-654)||(622316-622391)
chr4 (600-669)||(16067346-16067416)
chr4 (578-628)||(49287430-49287480)
chr4 (580-645)||(53892253-53892319)
chr4 (576-630)||(32617603-32617657)
chr4 (577-630)||(27509632-27509685)
[»] chr3 (28 HSPs)
chr3 (17-334)||(51741328-51741645)
chr3 (566-669)||(27864787-27864891)
chr3 (577-670)||(24107150-24107244)
chr3 (568-665)||(27865046-27865144)
chr3 (577-653)||(31596747-31596824)
chr3 (578-669)||(38758852-38758943)
chr3 (576-661)||(3171487-3171573)
chr3 (577-647)||(16907929-16908000)
chr3 (577-667)||(46684097-46684188)
chr3 (577-656)||(24107408-24107488)
chr3 (576-669)||(54446259-54446354)
chr3 (576-665)||(19860489-19860579)
chr3 (576-653)||(38758606-38758684)
chr3 (570-627)||(11422371-11422428)
chr3 (574-641)||(46685537-46685605)
chr3 (578-638)||(18025880-18025941)
chr3 (575-625)||(3171775-3171825)
chr3 (580-661)||(54446022-54446104)
chr3 (577-653)||(14812426-14812503)
chr3 (598-669)||(21792360-21792433)
chr3 (589-656)||(21792228-21792296)
chr3 (601-667)||(19860736-19860802)
chr3 (602-653)||(18026111-18026163)
chr3 (570-630)||(25629423-25629483)
chr3 (576-630)||(30385179-30385233)
chr3 (577-630)||(42592399-42592452)
chr3 (580-630)||(18024567-18024617)
chr3 (576-630)||(18024923-18024977)
[»] chr5 (17 HSPs)
chr5 (576-669)||(23322342-23322436)
chr5 (576-669)||(5841121-5841215)
chr5 (577-669)||(42792947-42793040)
chr5 (576-668)||(34634066-34634159)
chr5 (576-663)||(9379928-9380016)
chr5 (578-661)||(43183230-43183314)
chr5 (574-654)||(5840873-5840954)
chr5 (593-669)||(25088419-25088496)
chr5 (593-669)||(25146388-25146465)
chr5 (581-667)||(1501077-1501164)
chr5 (576-661)||(23322096-23322182)
chr5 (579-661)||(9380705-9380788)
chr5 (576-653)||(15933354-15933432)
chr5 (576-630)||(15933611-15933665)
chr5 (578-643)||(20244521-20244587)
chr5 (581-654)||(25089049-25089123)
chr5 (581-654)||(25147018-25147092)
[»] scaffold0069 (2 HSPs)
scaffold0069 (580-669)||(19897-19987)
scaffold0069 (580-661)||(20151-20232)
[»] chr2 (15 HSPs)
chr2 (567-669)||(38695132-38695235)
chr2 (578-668)||(18166633-18166724)
chr2 (569-663)||(14159197-14159292)
chr2 (576-661)||(42963020-42963106)
chr2 (576-668)||(4410620-4410713)
chr2 (576-669)||(42962766-42962860)
chr2 (575-663)||(4734202-4734291)
chr2 (575-661)||(14160408-14160495)
chr2 (578-663)||(4733304-4733390)
chr2 (576-656)||(18171337-18171418)
chr2 (575-661)||(38694885-38694972)
chr2 (582-667)||(4409164-4409250)
chr2 (577-630)||(39110071-39110124)
chr2 (576-630)||(36099291-36099345)
chr2 (576-630)||(45001051-45001105)
[»] chr6 (18 HSPs)
chr6 (775-893)||(1180942-1181060)
chr6 (577-669)||(5367659-5367751)
chr6 (577-669)||(3659196-3659288)
chr6 (775-890)||(1186319-1186434)
chr6 (575-667)||(8286785-8286878)
chr6 (576-667)||(8287411-8287503)
chr6 (676-767)||(1185907-1185998)
chr6 (687-769)||(1180553-1180635)
chr6 (576-654)||(3658950-3659029)
chr6 (577-656)||(28944244-28944324)
chr6 (578-622)||(5367407-5367451)
chr6 (578-630)||(9899560-9899612)
chr6 (578-610)||(13119207-13119239)
chr6 (580-611)||(3720052-3720083)
chr6 (576-630)||(29836156-29836210)
chr6 (573-630)||(8938881-8938938)
chr6 (577-630)||(19048243-19048296)
chr6 (577-630)||(30859919-30859972)
[»] scaffold0008 (2 HSPs)
scaffold0008 (576-669)||(266864-266958)
scaffold0008 (576-661)||(266619-266705)
[»] chr7 (13 HSPs)
chr7 (577-669)||(4265220-4265313)
chr7 (578-654)||(8905640-8905717)
chr7 (576-663)||(18471756-18471844)
chr7 (576-647)||(18470137-18470209)
chr7 (577-656)||(25749311-25749390)
chr7 (576-647)||(25749396-25749468)
chr7 (579-657)||(8329037-8329115)
chr7 (579-656)||(4264977-4265055)
chr7 (580-648)||(8328197-8328266)
chr7 (581-657)||(8342654-8342731)
chr7 (580-654)||(8905898-8905973)
chr7 (773-820)||(8552732-8552779)
chr7 (575-630)||(19069958-19070013)
[»] chr8 (11 HSPs)
chr8 (579-669)||(18203300-18203391)
chr8 (572-663)||(10535994-10536086)
chr8 (580-661)||(30905978-30906060)
chr8 (576-648)||(10536792-10536865)
chr8 (579-663)||(32539435-32539520)
chr8 (579-664)||(30905397-30905483)
chr8 (572-654)||(18202767-18202850)
chr8 (578-630)||(9237762-9237814)
chr8 (575-629)||(9237309-9237363)
chr8 (602-643)||(32538283-32538325)
chr8 (577-630)||(10398704-10398757)
[»] chr1 (9 HSPs)
chr1 (578-663)||(9114819-9114905)
chr1 (578-648)||(14903806-14903877)
chr1 (575-663)||(14904581-14904670)
chr1 (576-663)||(17690921-17691009)
chr1 (577-669)||(37499416-37499509)
chr1 (570-663)||(17689728-17689821)
chr1 (574-654)||(30335231-30335311)
chr1 (580-625)||(37499178-37499223)
chr1 (576-646)||(9116064-9116134)
[»] scaffold0006 (2 HSPs)
scaffold0006 (579-667)||(93633-93721)
scaffold0006 (601-654)||(93890-93944)


Alignment Details
Target: chr4 (Bit Score: 651; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 17 - 868
Target Start/End: Original strand, 10202129 - 10202969
Alignment:
Q  17 attgacaataacttcatggttgatttctataacaggcatgtcgcctcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttg 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10202129 attgacaataacttcatggttgatttttataacaggcatgtcgcttcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttg 10202228  T
Q  117 aatgtttgaaagagattggtgacatatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggagga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10202229 aatgtttgaaagagattggtgacatatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggagga 10202328  T
Q  217 atgtccagaacttggatcagttggtgatattttagcttcttcagattttgatattcatggctctgtgttggtcattcaacaacatagagatgtcaagaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10202329 atgtccagaacttggatcagttggtgatattttagcttcttcagattttgatattcatggttctgtgttggtcattcaacaacatagagatgtcaagaaa 10202428  T
Q  317 ggtttaatacatgattaacatttaaatacaatagagttagacttcttcatgtacttaactttatgaacataaggtgtatagatgaaacnnnnnnnncttc 416  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         |||    
T  10202429 ggtctaatacatgattaacatttaaatacaatagagttagacttcttcatgtacttagctttatgaacataaggtgtatagatgaaactttttttt-ttc 10202527  T
Q  417 ctttaacattgtgttaaacaaaaaattaacaagcacaccatttcatctagtccnnnnnnnngcatacaatttaatcgtaattttttattcacatttagtc 516  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  10202528 ccttaacattgtgttaaacaaaaaattaacaagcacaacatttcatctagtccaaaaaaaagcatacaatttaatcgtaattttttattcacatttagtc 10202627  T
Q  517 taaattacaaacca---tgtttatcttttcggaatgagaacaaaaattcaacaaatatataataggcttaattaatgatttggtcccttaagttatttgt 613  Q
    ||||||||||||||   |||||||||||| ||||||||||| |||||||              ||| ||||||||||||||| ||| |||| |||||||     
T  10202628 taaattacaaaccatattgtttatcttttgggaatgagaaccaaaattc--------------aggtttaattaatgatttgatcctttaaattatttgc 10202713  T
Q  614 tggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagttacaatttggatgggtttatcaagattgatccaataatcatga 712  Q
    ||||||||||||||| |||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10202714 tggttacattttggtcccataaattattaacgttacaatttgatgccttaagttatttacaatttggatgggtttatcaagattgatccaataatcatga 10202813  T
Q  713 attattcaatcaagtttttctcattgagggtattgtcactaaggcgagtactttttgaatagacaagtggtttcttgaattgtttccgaaattccctttt 812  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10202814 attattcaatcaagtttttctcattgagggtattgtcactaaggcgagtactttttgaatagacaagtggtttcttgaattgtttccgaaattccctttt 10202913  T
Q  813 attgagagttttattttaaattattgtgacatgcctgaaaagattgatatttcaag 868  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10202914 cttgagagttttattttaaattcttgtgacatgcctgaaaagattgatatttcaag 10202969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 578 - 669
Target Start/End: Original strand, 9268023 - 9268115
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  9268023 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataagttattaaagttacaatttggtcccttaagttagt 9268115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 578 - 669
Target Start/End: Complemental strand, 10468816 - 10468724
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  10468816 ggcttaattaatcatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttggtccgttaagttagt 10468724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 578 - 667
Target Start/End: Complemental strand, 3991011 - 3990921
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 667  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  3991011 ggcttaattattgatttggtcccttaagttaattgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagtta 3990921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 580 - 669
Target Start/End: Complemental strand, 12585492 - 12585402
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||    
T  12585492 cttaattaatgatttggtcccttaagttatttgttggttacattttgatctcataagttattaacattacaatttggtcccttaagttagt 12585402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 579 - 654
Target Start/End: Original strand, 45667232 - 45667308
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45667232 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttg 45667308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 578 - 669
Target Start/End: Complemental strand, 49028599 - 49028507
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  49028599 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaatgttacaatttggtcccttaagttagt 49028507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 579 - 669
Target Start/End: Original strand, 52677553 - 52677644
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||    
T  52677553 gcttaattaattatttggtcccttaagttatttgttggttacaatttggtcccataagttattaacgttacaatttggtccattaagttagt 52677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 581 - 669
Target Start/End: Original strand, 25225793 - 25225882
Alignment:
Q  581 ttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||  |||||||||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggttatattttggtctcataagttattaacgttacaattttgtcgcttaagttagt 25225882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 577 - 663
Target Start/End: Complemental strand, 9450995 - 9450908
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 663  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||| ||||||    
T  9450995 aggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaa 9450908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 577 - 654
Target Start/End: Original strand, 10286409 - 10286487
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  10286409 aggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcccattagttattaacgttacaatttg 10286487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 577 - 667
Target Start/End: Original strand, 17931287 - 17931378
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 667  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||  |||| ||||||||||    
T  17931287 aggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaacgttacaaaatggtcccttaagtta 17931378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 576 - 648
Target Start/End: Original strand, 9449713 - 9449786
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttac 648  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  9449713 taggcttaattaatgatttggtccattaagttatttgttggttacgttttggtctcataagttattaacgttac 9449786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 576 - 663
Target Start/End: Complemental strand, 28451614 - 28451526
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 663  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||  |||||| ||||||    
T  28451614 taggcttaattaatgatttagtcccttaagttatttgttggttacattttggtctcataagatattaacattacgttttggtcccttaa 28451526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 578 - 667
Target Start/End: Complemental strand, 17932211 - 17932121
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 667  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||||||| |||||||  |||| ||||||||||    
T  17932211 ggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaaggttacaaaatggtcccttaagtta 17932121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 576 - 648
Target Start/End: Original strand, 28450748 - 28450821
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttac 648  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  28450748 taggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttac 28450821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 577 - 668
Target Start/End: Original strand, 4437679 - 4437771
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttag 668  Q
    |||||||||||||| |||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||  |||||| | |||||||||    
T  4437679 aggcttaattaatggtttggtccattaaattatttgttggttacaatttggtcccataagttattaacgttacgttttggtcctttaagttag 4437771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 661
Target Start/End: Original strand, 49028260 - 49028347
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||| ||||    
T  49028260 ataggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 49028347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 572 - 661
Target Start/End: Original strand, 36098739 - 36098829
Alignment:
Q  572 ataataggcttaattaatgatttggtcccttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttggtacctt 661  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||| | ||||||| |||||||||||| |||||||| ||||    
T  36098739 ataatagacttaattaatgatgtggtctcttaagttatttgttggttatattttagttccataaattattaacgttataatttggtccctt 36098829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 576 - 661
Target Start/End: Complemental strand, 52677890 - 52677804
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtacctt 661  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||| |||||||| ||||    
T  52677890 taggcataattaatgatgtggtcccttaggttatttgttggttacattttagtctcataagttattaatgttataatttggtccctt 52677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 580 - 668
Target Start/End: Complemental strand, 4439107 - 4439018
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttag 668  Q
    ||||||||||||  |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||  ||||||||||    
T  4439107 cttaattaatgacgtggtccctaaagttatttgttggttacaatttggtctcataagttattaacgttacgttttggtctcttaagttag 4439018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 578 - 654
Target Start/End: Original strand, 12585158 - 12585235
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 654  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||||    
T  12585158 ggcttaattaatgacgtggtcccttaagttatttgttgattacattttagtctcataagttattaacattacaatttg 12585235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 578 - 661
Target Start/End: Original strand, 10468480 - 10468564
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtacctt 661  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||   |||||| |||||||||||||||||| ||||    
T  10468480 ggcttaattactgatgtggtcccttaagttatttgttggttacattttagtcatctaagtttttaacgttacaatttggtccctt 10468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 582 - 669
Target Start/End: Original strand, 21038119 - 21038206
Alignment:
Q  582 taattaatgatttggtcccttaagttatttgttggttacattttggtcca-taagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||| ||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||| | ||||||||||    
T  21038119 taattaatgatttggtcc-ttaagttgtttgttgattatattttggttcaataagttattaacgttacaatttggtcctttaagttagt 21038206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 21038450 - 21038374
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtccataagttattaacgttacaattt 653  Q
    |||| |||||||||||| || |||||||||||||||| |||||||||||| |||| |||||||||||||||| |||||    
T  21038450 taggtttaattaatgatgtgatcccttaagttatttgctggttacattttagtcc-taagttattaacgttataattt 21038374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 580 - 656
Target Start/End: Complemental strand, 16067656 - 16067581
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggt 656  Q
    |||||||||||||   |||| |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  16067656 cttaattaatgata--gtcctttaaattatttgttggttacattttagtctcataagttattaacgttacaatttggt 16067581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 579 - 648
Target Start/End: Complemental strand, 21325765 - 21325695
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttac 648  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||| ||| ||| |||||||||||||||    
T  21325765 gcttaattaatgatttgatctcttaaattatttgttggttacattttagtcacattagttattaacgttac 21325695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 578 - 630
Target Start/End: Original strand, 12315855 - 12315907
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  12315855 ggcttaattaatgatttggtcctttaagttatttgtaggttacaatttggtcc 12315907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 602 - 669
Target Start/End: Original strand, 622082 - 622149
Alignment:
Q  602 taagttatttgttggttacattttggtccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||| ||| |||||| |||||| ||||||||||||| |||||||| |||||| |||||    
T  622082 taagttatttgttgattatattttgatccatacgttattaacgttataatttggtcccttaaattagt 622149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 580 - 654
Target Start/End: Complemental strand, 622391 - 622316
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttg 654  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| | || ||| |||||||| ||||| |||||    
T  622391 cttaattaatgatgtgatcccttaagttatttgttggttacattttagacctatatgttattaatgttacgatttg 622316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 669
Target Start/End: Original strand, 16067346 - 16067416
Alignment:
Q  600 cttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||| | || |||| |||||||||||||||||||||   ||||||||||    
T  16067346 cttaagttatttgttggttacattttagttctataaattattaacgttacaatttggtcttttaagttagt 16067416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 628
Target Start/End: Original strand, 49287430 - 49287480
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt 628  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  49287430 ggcttaattaatgatttagtctctttagttatttgttggttaaattttggt 49287480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 645
Target Start/End: Original strand, 53892253 - 53892319
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgt 645  Q
    ||||||||||||||||||  |||||||||||| | ||||||| || ||| |||||||||||||||||    
T  53892253 cttaattaatgatttggtttcttaagttatttataggttacaattgggtcccataagttattaacgt 53892319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 32617657 - 32617603
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  32617657 taggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 32617603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 27509632 - 27509685
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  27509632 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 27509685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 6e-86; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 51741328 - 51741645
Alignment:
Q  17 attgacaataacttcatggttgatttctataacaggcatgtcgcctcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttg 116  Q
    ||||||||||  || ||||||||||| ||||||||| |||| || || ||| | ||||||||||| ||||| ||||||||  |||||| ||||||||| |    
T  51741328 attgacaatacttttatggttgatttttataacaggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtgg 51741427  T
Q  117 aatgtttgaaagagattggtgacatatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggagga 216  Q
    ||| ||||||||||||||| ||| | ||||||||||||||||| ||||  ||||||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  51741428 aatctttgaaagagattggggacttgtactctttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaaga 51741527  T
Q  217 atgtccagaacttggatcagttggtgatattttagcttcttcagattttgatattcatggctctgtgttggtcattcaacaacatagagatgtcaagaaa 316  Q
    |||||||||||||||| | ||||||||| | || ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||     
T  51741528 atgtccagaacttggaacggttggtgatgtcttggcttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaag 51741627  T
Q  317 ggtttaatacatgattaa 334  Q
    ||  |||| |||||||||    
T  51741628 ggcataattcatgattaa 51741645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 566 - 669
Target Start/End: Original strand, 27864787 - 27864891
Alignment:
Q  566 aaatatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaag 664  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  27864787 aaatataatataggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcccttaag 27864886  T
Q  665 ttagt 669  Q
    |||||    
T  27864887 ttagt 27864891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 577 - 670
Target Start/End: Original strand, 24107150 - 24107244
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagtt 670  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  24107150 aggcttaattaatgatttggtcccttgagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcacttaagttagtt 24107244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 568 - 665
Target Start/End: Complemental strand, 27865144 - 27865046
Alignment:
Q  568 atatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagt 665  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||    
T  27865144 atatattataggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtcctttaagt 27865046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 577 - 653
Target Start/End: Complemental strand, 31596824 - 31596747
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaattt 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31596824 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttattaacgttaccattt 31596747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 578 - 669
Target Start/End: Complemental strand, 38758943 - 38758852
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| || |||||||||    
T  38758943 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttatcaacgttataatttggt-ccctaagttagt 38758852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 576 - 661
Target Start/End: Original strand, 3171487 - 3171573
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||    
T  3171487 taggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 3171573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 577 - 647
Target Start/End: Original strand, 16907929 - 16908000
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgtta 647  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  16907929 aggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgtta 16908000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 577 - 667
Target Start/End: Original strand, 46684097 - 46684188
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 667  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||  |||||| ||||||||||    
T  46684097 aggcttaattaatgatttggtcgcttaagttatttgttggttacattttgatcccataagttattaacattacgttttggtcccttaagtta 46684188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 577 - 656
Target Start/End: Complemental strand, 24107488 - 24107408
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggt 656  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||    
T  24107488 aggcttaattaatgatgtggtccattaagttaattgttggttacattttagtcccataagttattaacgttacaatttggt 24107408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 54446354 - 54446259
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttaca-ttttggtcc-ataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||   ||||||||||    
T  54446354 taggtttaattaatgatttggtcccttaagttatttgttagttacatttttggtcctataagttattaacattacaatttggtcttttaagttagt 54446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 576 - 665
Target Start/End: Original strand, 19860489 - 19860579
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagt 665  Q
    ||||||||||||||||| |||||  ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| | ||||||    
T  19860489 taggcttaattaatgatgtggtctattaagttatttattggttacattttagtcccataagttattaacgttacaatttggtcctttaagt 19860579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 576 - 653
Target Start/End: Original strand, 38758606 - 38758684
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaattt 653  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  38758606 taggcttaattagtgatgttgtcccttaagttatttgttggttacattttagtcccataagttattaacgttacaattt 38758684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 570 - 627
Target Start/End: Original strand, 11422371 - 11422428
Alignment:
Q  570 atataataggcttaattaatgatttggtcccttaagttatttgttggttacattttgg 627  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11422371 atataattggcttaattaatgatttggtcccttaagttatttgttggttacattttgg 11422428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 574 - 641
Target Start/End: Complemental strand, 46685605 - 46685537
Alignment:
Q  574 aataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttatta 641  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  46685605 aataggcttaattaatgatttggtcccttaaattatttattggttacattttggtcccataagttatta 46685537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 578 - 638
Target Start/End: Original strand, 18025880 - 18025941
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagtta 638  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18025880 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 18025941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 625
Target Start/End: Complemental strand, 3171825 - 3171775
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacatttt 625  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3171825 ataggcttaattaatgatttggtcccttaagttatttgtcggttacatttt 3171775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 580 - 661
Target Start/End: Original strand, 54446022 - 54446104
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||| ||||| || ||||||||||||| |||||||||  ||| |||||||||||||||||||||||||| ||||    
T  54446022 cttaattaatgatgtggtctctaaagttatttgttgattacattttaatcctataagttattaacgttacaatttggtccctt 54446104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 577 - 653
Target Start/End: Original strand, 14812426 - 14812503
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaattt 653  Q
    ||||||||| ||||||||| ||  ||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  14812426 aggcttaatcaatgatttgatcatttaagttattttttagttacattttggtcccataagttattaacgttacaattt 14812503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 598 - 669
Target Start/End: Complemental strand, 21792433 - 21792360
Alignment:
Q  598 cccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggt-accttaagttagt 669  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||  ||||||||||||    
T  21792433 cccttaagttatttgttgtttacattttggtcctctaagttattaacgttacaatttggtctccttaagttagt 21792360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 589 - 656
Target Start/End: Original strand, 21792228 - 21792296
Alignment:
Q  589 tgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggt 656  Q
    |||| ||||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||    
T  21792228 tgatgtggtcccttaatttattggttggttacattttagtcccataagttattaacgttacaatttggt 21792296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 601 - 667
Target Start/End: Complemental strand, 19860802 - 19860736
Alignment:
Q  601 ttaagttatttgttggttacattttggtccataagttattaacgttacaatttggtaccttaagtta 667  Q
    ||||||||||| |||||||||||||||||   ||||||||||| |||||||||||| | ||||||||    
T  19860802 ttaagttatttattggttacattttggtctcaaagttattaacattacaatttggtcctttaagtta 19860736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 653
Target Start/End: Complemental strand, 18026163 - 18026111
Alignment:
Q  602 taagttatttgttggttacattttggt-ccataagttattaacgttacaattt 653  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  18026163 taagttatttgttggttacattttagtcccataagttattaacgttaccattt 18026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 630
Target Start/End: Original strand, 25629423 - 25629483
Alignment:
Q  570 atataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||||||||| | |||||||||||||| |||||| ||| |||| |||||||||    
T  25629423 atataataggcttaattactcatttggtcccttaacttattttttgattacgttttggtcc 25629483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 30385179 - 30385233
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  30385179 taggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 30385233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 42592399 - 42592452
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  42592399 aggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 42592452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 580 - 630
Target Start/End: Original strand, 18024567 - 18024617
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  18024567 cttaattactcatttggtcccttaacttattttttggtttcattttggtcc 18024617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 18024977 - 18024923
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  18024977 taggcttaattactaatttggtcccttaacttattttttggtttcgttttggtcc 18024923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 8e-39; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 23322436 - 23322342
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttgg-tccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  23322436 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagt 23322342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 5841215 - 5841121
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||    
T  5841215 taggcttaattaatgatttggtctcttaacttatttgttggttacattttggtcccataaattattaacgttacaatttggttctttaagttagt 5841121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 577 - 669
Target Start/End: Original strand, 42792947 - 42793040
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  42792947 aggcttaattaatgatttggtcgcttaagttatttgttggtttcattttggtcccataaattattaatgttacaatttggtcccttaagttagt 42793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 576 - 668
Target Start/End: Original strand, 34634066 - 34634159
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttag 668  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | |||||||||    
T  34634066 taggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtcccataagttattaacgttacattttggtccattaagttag 34634159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 576 - 663
Target Start/End: Original strand, 9379928 - 9380016
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttgg-tccataagttattaacgttacaatttggtaccttaa 663  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||||| ||||||    
T  9379928 taggcttaattaatgaattggtcccttaagttatttgttggttacattttggttccacaagttattaacgttacgttttggtcccttaa 9380016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 578 - 661
Target Start/End: Original strand, 43183230 - 43183314
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||    
T  43183230 ggcttaattaataatttggtcccttaagttatttgttggttacattttggtcccataaattattaacattacaatttggtccctt 43183314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 574 - 654
Target Start/End: Original strand, 5840873 - 5840954
Alignment:
Q  574 aataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 654  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  5840873 aataggtttaattaatgatgtggtcccttaagttatttgttggttatattttagtgccataagttattaacgttacaatttg 5840954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 593 - 669
Target Start/End: Original strand, 25088419 - 25088496
Alignment:
Q  593 ttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||    
T  25088419 ttggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagt 25088496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 593 - 669
Target Start/End: Original strand, 25146388 - 25146465
Alignment:
Q  593 ttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||    
T  25146388 ttggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagt 25146465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 667
Target Start/End: Complemental strand, 1501164 - 1501077
Alignment:
Q  581 ttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 667  Q
    ||||||||| ||||| ||||||||||||||| |||||| ||||||||| |||||| |||||||||||||| |||||| ||||||||||    
T  1501164 ttaattaatcatttgatcccttaagttatttattggtttcattttggtcccataaattattaacgttacattttggtcccttaagtta 1501077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 576 - 661
Target Start/End: Original strand, 23322096 - 23322182
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||    
T  23322096 taggcttaattaatgatgtagtctattaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 23322182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 579 - 661
Target Start/End: Complemental strand, 9380788 - 9380705
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||  |||||| ||||    
T  9380788 gcttaattaatgaattgatcccttaagttatttgttggttacattttgatcccataagttattaatgttacgttttggtccctt 9380705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 653
Target Start/End: Original strand, 15933354 - 15933432
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaattt 653  Q
    |||||||||| |||||| ||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  15933354 taggcttaatcaatgatgtggtcccttatattatttgttggttatattttagtctcataagttattaacgttacaattt 15933432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 15933665 - 15933611
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  15933665 taggcttaattcatgatttggtcccttaagttatttgttggttacattttagtcc 15933611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 643
Target Start/End: Complemental strand, 20244587 - 20244521
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaac 643  Q
    ||||||||||||||||| ||  ||||| ||||||||||||||||||||||| |||||| ||||||||    
T  20244587 ggcttaattaatgattttgttacttaaattatttgttggttacattttggtcccataaattattaac 20244521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 25089123 - 25089049
Alignment:
Q  581 ttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 654  Q
    |||||||||||  |||| ||||||||||||| ||||||| ||||| ||  ||||||||||||| | |||||||||    
T  25089123 ttaattaatgacgtggttccttaagttatttattggttatattttagtgtcataagttattaatgctacaatttg 25089049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 25147092 - 25147018
Alignment:
Q  581 ttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 654  Q
    |||||||||||  |||| ||||||||||||| ||||||| ||||| ||  ||||||||||||| | |||||||||    
T  25147092 ttaattaatgacgtggttccttaagttatttattggttatattttagtgtcataagttattaatgctacaatttg 25147018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 580 - 669
Target Start/End: Original strand, 19897 - 19987
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  19897 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcgcataagttattaacgttacaatttggtcccttaagttagt 19987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 20232 - 20151
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||  | |||||| ||||||||||||||||||||| ||||    
T  20232 cttaattaatgatgtggtcc-ttaagttatttgttggttatattttaattccataatttattaacgttacaatttggtccctt 20151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 1e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 567 - 669
Target Start/End: Complemental strand, 38695235 - 38695132
Alignment:
Q  567 aatatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagt 665  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  38695235 aatataaaaaaggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaacgttacaatttggtcccttaagt 38695136  T
Q  666 tagt 669  Q
    ||||    
T  38695135 tagt 38695132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 578 - 668
Target Start/End: Original strand, 18166633 - 18166724
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttag 668  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  18166633 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatctcataagttattaacgttacaatttggtcccttaagttag 18166724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 569 - 663
Target Start/End: Original strand, 14159197 - 14159292
Alignment:
Q  569 tatataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 663  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||| ||||||    
T  14159197 tatataaaaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaa 14159292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 576 - 661
Target Start/End: Complemental strand, 42963106 - 42963020
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  42963106 taggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtctcataagttattaacgttacaatttggtgcctt 42963020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 576 - 668
Target Start/End: Complemental strand, 4410713 - 4410620
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttag 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||| |||||| |||||||||||    
T  4410713 taggcttaattaatgatttggtcccttaagttatttgttggttacaatttggtcccgtaagttattaacgctacattttggtcccttaagttag 4410620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 576 - 669
Target Start/End: Original strand, 42962766 - 42962860
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||| | ||||||||||||||||| ||||||||||||    
T  42962766 taggcttaattaatgatttggtcccttaggttatttgttggttgcattttgatctcataagtgactaacgttacaatttggtcccttaagttagt 42962860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 575 - 663
Target Start/End: Complemental strand, 4734291 - 4734202
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggtaccttaa 663  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||| ||||||    
T  4734291 ataggcttaattaatgaattggtcccttaagttatttgttggttacattttgatcctataagttattaacgttacgttttggtcccttaa 4734202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 575 - 661
Target Start/End: Complemental strand, 14160495 - 14160408
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||| ||||    
T  14160495 ataggcttaattaatgatttggtccattaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtccctt 14160408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 578 - 663
Target Start/End: Original strand, 4733304 - 4733390
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 663  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||  |||||| ||||||    
T  4733304 ggcttaattaatgatttgatcccttaaattatttgttggttacattttggtcccataagttattaacattacgttttggtcccttaa 4733390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 576 - 656
Target Start/End: Complemental strand, 18171418 - 18171337
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggt 656  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||  ||||||||||||    
T  18171418 taggcttaattaatgatatggtcccttaaattatttgttggttacattttagtcccataagttattaaaattacaatttggt 18171337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 661
Target Start/End: Original strand, 38694885 - 38694972
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||| ||||    
T  38694885 ataggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 38694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 582 - 667
Target Start/End: Original strand, 4409164 - 4409250
Alignment:
Q  582 taattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagtta 667  Q
    ||||||||||||||||| ||||| ||||||||| |||||| ||||||| |||||||||||||||||||  |||||| ||||||||||    
T  4409164 taattaatgatttggtctcttaaattatttgttagttacaatttggtctcataagttattaacgttacgttttggtcccttaagtta 4409250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 39110071 - 39110124
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  39110071 aggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 39110124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 36099291 - 36099345
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  36099291 taggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 36099345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 45001051 - 45001105
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  45001051 taggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 45001105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 5e-34; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 775 - 893
Target Start/End: Original strand, 1180942 - 1181060
Alignment:
Q  775 acaagtggtttcttgaattgtttccgaaattcccttttattgagagttttattttaaattattgtgacatgcctgaaaagattgatatttcaagtgttcg 874  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |  |||||  ||||| | |||||| | |||||||||||||||||||||||    
T  1180942 acaagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaattaaacaattgtaaaatgcctaagaagattgatatttcaagtgttcg 1181041  T
Q  875 acttaagaggttggagttt 893  Q
    ||||||||| |||||||||    
T  1181042 acttaagagattggagttt 1181060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 5367751 - 5367659
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  5367751 aggcttaattaatgatttggtcc-ttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagt 5367659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 3659288 - 3659196
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  3659288 aggcttaattaatgatttggtcccttaagttatttgttagttacattttggtcccataagttattaac-ttacaatttggtcccttaagttagt 3659196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 775 - 890
Target Start/End: Original strand, 1186319 - 1186434
Alignment:
Q  775 acaagtggtttcttgaattgtttccgaaattcccttttattgagagttttattttaaattattgtgacatgcctgaaaagattgatatttcaagtgttcg 874  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |  ||| |  ||||||| || ||||| | |||||||||||||||||||||    
T  1186319 acaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttcg 1186418  T
Q  875 acttaagaggttggag 890  Q
    ||||||||||||||||    
T  1186419 acttaagaggttggag 1186434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 575 - 667
Target Start/End: Original strand, 8286785 - 8286878
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 667  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||| || ||||||||||    
T  8286785 ataggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccttaagtaattaacgttacattttagttccttaagtta 8286878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 576 - 667
Target Start/End: Complemental strand, 8287503 - 8287411
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtccataagttatt-aacgttacaatttggtaccttaagtta 667  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |  |||| ||||||||| |||||| ||||||||||    
T  8287503 taggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcctttaactattcaacgttacattttggtcccttaagtta 8287411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 676 - 767
Target Start/End: Original strand, 1185907 - 1185998
Alignment:
Q  676 ttggatgggtttatcaagattgatccaataatcatgaattattcaatcaagtttttctcattgagggtattgtcactaaggcgagtactttt 767  Q
    ||||| |||||||| ||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| ||||||||||||||  ||||||||    
T  1185907 ttggaggggtttataaagattgatccaatattcacgaatcattcaataaagtttttctcattgagggaattgtcactaaggcatgtactttt 1185998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 687 - 769
Target Start/End: Original strand, 1180553 - 1180635
Alignment:
Q  687 tatcaagattgatccaataatcatgaattattcaatcaagtttttctcattgagggtattgtcactaaggcgagtactttttg 769  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||||    
T  1180553 tatcaagattgatccagtattcatgaattattcgatcaagtttttctctttgagggaattgtcactaacgcgtgtactttttg 1180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 576 - 654
Target Start/End: Original strand, 3658950 - 3659029
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttg 654  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||| ||| || |||||||||||||| |||||||||||    
T  3658950 taggcttaattactgatgtggtcccttaagttatttattggttacagtttagtcccataagttattaaagttacaatttg 3659029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 577 - 656
Target Start/End: Original strand, 28944244 - 28944324
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggt 656  Q
    ||||||||||||| || || |||||||||| ||||||||||||||||||  || | ||||||||||| |||||||||||||    
T  28944244 aggcttaattaatcatctgctcccttaagtcatttgttggttacattttaatctcgtaagttattaatgttacaatttggt 28944324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 622
Target Start/End: Original strand, 5367407 - 5367451
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacat 622  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  5367407 ggcttaattactgatatggtcccttaagttatttgttggttacat 5367451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 630
Target Start/End: Original strand, 9899560 - 9899612
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||| | |||||||||||||| |||||| |||||| |||||||||||    
T  9899560 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtcc 9899612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 13119239 - 13119207
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatt 610  Q
    |||||||||||||||||||||||||||||||||    
T  13119239 ggcttaattaatgatttggtcccttaagttatt 13119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 611
Target Start/End: Original strand, 3720052 - 3720083
Alignment:
Q  580 cttaattaatgatttggtcccttaagttattt 611  Q
    ||||||||||||||||||||||||||||||||    
T  3720052 cttaattaatgatttggtcccttaagttattt 3720083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 29836210 - 29836156
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||||| | | |||||||||||| |||||| |||||||| |||||||||    
T  29836210 taggcttaattattcagttggtcccttaacttattttttggttacgttttggtcc 29836156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 630
Target Start/End: Original strand, 8938881 - 8938938
Alignment:
Q  573 taataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||||||| |  ||||||||||||| |||||| |||||| | |||||||||    
T  8938881 taataggcttaattactcttttggtcccttaacttattttttggtttcgttttggtcc 8938938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 19048243 - 19048296
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||| |  ||||||||||||| |||||| |||||| |||||||||||    
T  19048243 aggcttaattacttttttggtcccttaacttattttttggtttcattttggtcc 19048296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 30859919 - 30859972
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  30859919 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 30859972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 266958 - 266864
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||    
T  266958 taggtttaattaatgatttggtcctttaagttatttgttggttacattttggtcacataagttattaaccttataatttggtcccttaagttagt 266864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 576 - 661
Target Start/End: Original strand, 266619 - 266705
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttggtacctt 661  Q
    |||| ||||| | |||| |||| ||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||| ||||    
T  266619 tagggttaatcagtgatgtggttccttaagttatttgttggttacattttagtccgataagttattaatgttataatttggtccctt 266705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 4265313 - 4265220
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||| | ||||||||||    
T  4265313 aggcttaattaatgatttggtcccttaagttagttgtcggttacattttgatcccataagttattaacgttacaatttggtccattaagttagt 4265220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 578 - 654
Target Start/End: Original strand, 8905640 - 8905717
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 654  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  8905640 ggcttaatcaatgatttggtctcttaagttatttgttggttacattttggtctcataagttattaatgttacaatttg 8905717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 576 - 663
Target Start/End: Complemental strand, 18471844 - 18471756
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 663  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  18471844 taggcttagttaatgatttggtcccttaagttatctgttggttacattttggtctcataagttattaacattatattttggtcccttaa 18471756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 576 - 647
Target Start/End: Original strand, 18470137 - 18470209
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgtta 647  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||||| | ||||||||||||| ||||    
T  18470137 taggcttaattaatgattttgtgccttaaattatttgttggttacattttggccacataagttattaatgtta 18470209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 577 - 656
Target Start/End: Original strand, 25749311 - 25749390
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggt 656  Q
    ||||||||||||||||| |||||||| ||||||| ||||| || ||||| || ||||||||||||||||||||||||||||    
T  25749311 aggcttaattaatgattcggtccctttagttatt-gttggctatattttagttccataagttattaacgttacaatttggt 25749390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 576 - 647
Target Start/End: Complemental strand, 25749468 - 25749396
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgtta 647  Q
    |||||||||||||| || || ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  25749468 taggcttaattaattatgtgttcccttaagttatttgttggttacaatttagtctcataagttattaacgtta 25749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 579 - 657
Target Start/End: Complemental strand, 8329115 - 8329037
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggta 657  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||| || ||||||||||||||||  |||||||    
T  8329115 gcttaattaatgaattggtct-ttaagttatttgttggttacattttggtctcaaaagttattaacgttacgttttggta 8329037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 579 - 656
Target Start/End: Original strand, 4264977 - 4265055
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggt 656  Q
    |||||||||||||| |||||  ||||||||||| ||||| ||||||| ||| |||||||||||||| ||||||||||||    
T  4264977 gcttaattaatgatgtggtcttttaagttattttttggtgacattttagtctcataagttattaacattacaatttggt 4265055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 580 - 648
Target Start/End: Original strand, 8328197 - 8328266
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttac 648  Q
    |||||||||||| | ||||||||||||||||| || |||| ||||||||| || ||||||||||||||||    
T  8328197 cttaattaatgaatcggtcccttaagttatttattagttagattttggtctcacaagttattaacgttac 8328266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 581 - 657
Target Start/End: Complemental strand, 8342731 - 8342654
Alignment:
Q  581 ttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggta 657  Q
    ||||||||||| ||||||| ||||||||||| ||||||||| ||||||| ||||||||| |||| ||||  |||||||    
T  8342731 ttaattaatgaattggtccattaagttattttttggttacactttggtctcataagttactaacattacgttttggta 8342654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 580 - 654
Target Start/End: Complemental strand, 8905973 - 8905898
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttg 654  Q
    ||||||||||||| || ||||||||||||||||||||||| |||||   | ||||| ||||||| |||||||||||    
T  8905973 cttaattaatgatgtgatcccttaagttatttgttggttatattttactttcataaattattaaggttacaatttg 8905898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 820
Target Start/End: Complemental strand, 8552779 - 8552732
Alignment:
Q  773 agacaagtggtttcttgaattgtttccgaaattcccttttattgagag 820  Q
    |||||| |||||||||||||||||| |||||||||||||  |||||||    
T  8552779 agacaaatggtttcttgaattgttttcgaaattccctttccttgagag 8552732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 630
Target Start/End: Complemental strand, 19070013 - 19069958
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||||| |  ||||||||||||| |||||| |||||| |||||||||||    
T  19070013 ataggcttaattacttttttggtcccttaacttattttttggtttcattttggtcc 19069958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 579 - 669
Target Start/End: Complemental strand, 18203391 - 18203300
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttgg-tccataagttattaacgttacaatttggtaccttaagttagt 669  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||  |||||||||||    
T  18203391 gcttaattaatgatttggtcccttaagttatttattggttatattttggttccataagttattaacgttacaatttagtctcttaagttagt 18203300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 572 - 663
Target Start/End: Original strand, 10535994 - 10536086
Alignment:
Q  572 ataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 663  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||  |||||| ||||||    
T  10535994 ataataggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaa 10536086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 30906060 - 30905978
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtacctt 661  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  30906060 cttaattaatgatgtggtctcttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtccctt 30905978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 576 - 648
Target Start/End: Complemental strand, 10536865 - 10536792
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttac 648  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  10536865 taggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttac 10536792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 579 - 663
Target Start/End: Complemental strand, 32539520 - 32539435
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||| ||| || ||||||    
T  32539520 gcttaattaatgatttggtcccttaagttatttgttggttacattttaatctcataagttattaacattacatttttgtcccttaa 32539435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 579 - 664
Target Start/End: Original strand, 30905397 - 30905483
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacatttt-ggtccataagttattaacgttacaatttggtaccttaag 664  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||   || |||| ||||||||||||||||||||| |||||||    
T  30905397 gcttaattaatgatttggtcccttaaattatttgttggttatattttaattctataacttattaacgttacaatttggtcccttaag 30905483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 572 - 654
Target Start/End: Original strand, 18202767 - 18202850
Alignment:
Q  572 ataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 654  Q
    ||||| |||||||||||| || | |||  ||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||    
T  18202767 ataattggcttaattaataatgtagtctattaagttatttgttgattacattttcgtctcataagttattaatgttacaatttg 18202850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 630
Target Start/End: Complemental strand, 9237814 - 9237762
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    |||||||||| | |||||||||||||| |||||| |||||||| |||||||||    
T  9237814 ggcttaattattcatttggtcccttaacttattttttggttacgttttggtcc 9237762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 575 - 629
Target Start/End: Original strand, 9237309 - 9237363
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc 629  Q
    ||||||||||||| |  ||||||||||||| |||||| |||||| ||||||||||    
T  9237309 ataggcttaattactcttttggtcccttaatttattttttggtttcattttggtc 9237363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 602 - 643
Target Start/End: Original strand, 32538283 - 32538325
Alignment:
Q  602 taagttatttgttggttacattttggtc-cataagttattaac 643  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  32538283 taagttatttgttggttacattttgatctcataagttattaac 32538325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 630
Target Start/End: Complemental strand, 10398757 - 10398704
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcc 630  Q
    ||||||||||| | |||||||||||||| |||||| |||||| | |||||||||    
T  10398757 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtcc 10398704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 578 - 663
Target Start/End: Original strand, 9114819 - 9114905
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 663  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||    
T  9114819 ggcttaattaatgattttgtcccttaagttatttgttggttacattttggtcccataagttattaacgttacgttttggtcccttaa 9114905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 578 - 648
Target Start/End: Original strand, 14903806 - 14903877
Alignment:
Q  578 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttac 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  14903806 ggcttaattaatgatttggtcccttaagttatttgttggttacattttgatcccataagttattaacgttac 14903877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 575 - 663
Target Start/End: Complemental strand, 14904670 - 14904581
Alignment:
Q  575 ataggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 663  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||  |||||| ||||||    
T  14904670 ataggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaa 14904581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 576 - 663
Target Start/End: Complemental strand, 17691009 - 17690921
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaa 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||  |||||| ||||||    
T  17691009 taggcttaattaatgatttggtcccttaagttatttgttggttatgttctggtcccataagttattaacgttacgttttggtcccttaa 17690921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 37499509 - 37499416
Alignment:
Q  577 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaagttagt 669  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||  |||||||||||    
T  37499509 aggcttaattaatgatttgacctcttaagttatttgttggttacattttggtctcataagttattaatgttataatttcgtctcttaagttagt 37499416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 570 - 663
Target Start/End: Original strand, 17689728 - 17689821
Alignment:
Q  570 atataataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttggtaccttaa 663  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||| ||||||||| ||| || ||||||    
T  17689728 atattatagacttaattaatgatttggtcccttaagttatttgttgattac-gtttggtctcataagttataaacgttacattttagtcccttaa 17689821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 574 - 654
Target Start/End: Complemental strand, 30335311 - 30335231
Alignment:
Q  574 aataggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgttacaatttg 654  Q
    ||||||||||||||||||| |||||| ||||||||||||||  ||||| ||| ||| |||||||||||||||||||||||||    
T  30335311 aataggcttaattaatgatgtggtcc-ttaagttatttgttacttacactttagtctcataagttattaacgttacaatttg 30335231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 625
Target Start/End: Original strand, 37499178 - 37499223
Alignment:
Q  580 cttaattaatgatttggtcccttaagttatttgttggttacatttt 625  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  37499178 cttaattaatgatttggtcccttaagttatttgttgcttacatttt 37499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 576 - 646
Target Start/End: Complemental strand, 9116134 - 9116064
Alignment:
Q  576 taggcttaattaatgatttggtcccttaagttatttgttggttacattttggtc-cataagttattaacgtt 646  Q
    |||||||||||||||  ||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  9116134 taggcttaattaatgtatta-tcctttaagttatttgttggttacattttggtctcataagttattaacgtt 9116064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 579 - 667
Target Start/End: Original strand, 93633 - 93721
Alignment:
Q  579 gcttaattaatgatttggtcccttaagttatttgttggttacattttggt-ccataagttattaacgttacaatttggtaccttaagtta 667  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||| || ||||||||||    
T  93633 gcttaattaatgatttgatcc-ttaagttatttgttagttacattttggtcccataaattattaacgttacaatttagtcccttaagtta 93721  T

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Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 601 - 654
Target Start/End: Complemental strand, 93944 - 93890
Alignment:
Q  601 ttaagttatttgttggttacattttggtcc-ataagttattaacgttacaatttg 654  Q
    |||| |||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  93944 ttaatttatttgttggttacattttagtcccataaattattaacgttacaatttg 93890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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