View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_31 (Length: 410)
Name: NF19589_low_31
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 46 - 394
Target Start/End: Complemental strand, 38038130 - 38037782
Alignment:
| Q |
46 |
gtagccatgatcatagattaaggcacaaactttaatgttgaggcaactttgatgaaaagatgctgggcaactatcgcagcaaatcaactctcctccgtct |
145 |
Q |
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| T |
38038130 |
gtagccatgatcatagattaaggcacaaactttaatgttgagacaactttgatgaaaagctgctggacaactatcgcagcaaatcaactctcctccgtct |
38038031 |
T |
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| Q |
146 |
ttacaaacaccacatgactcttcgttaaggtctttatacactctctcaggttccagattcattttgataaaaaatccttagctctctacaaaacaactaa |
245 |
Q |
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| T |
38038030 |
ttacaaacaccacatgactcttcgttaaggtctttatacactctctcaggttccggattcattttgataaaaaatccttagctctctacaaaacaactaa |
38037931 |
T |
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| Q |
246 |
taaatttaattagcattaacgaaaacaaacaaatgcataacaataaatcaacttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtctatg |
345 |
Q |
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| T |
38037930 |
taaatttaattagcgttaacgaaaacaaacaaatgcataacaataaatcaatttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtctatg |
38037831 |
T |
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| Q |
346 |
aatggtgttttgatcttgtagattgtattggtagaagtaggcacccttc |
394 |
Q |
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| T |
38037830 |
aatggtgttttgatcttgtagattgtattggtagaagtaggcacccttc |
38037782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 329
Target Start/End: Complemental strand, 10625573 - 10625335
Alignment:
| Q |
89 |
caactttgatgaaaagatgctggg-caactatcgcagcaaatcaactctcctccgtctttacaaacaccacatgactcttcgttaaggtctttatacact |
187 |
Q |
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| T |
10625573 |
caactttgatgaaaagctgggaggacaactatcacagcaaattaaatctcc-ccgtctccacaaacaccacatgaatcatcattaaaattcttatacact |
10625475 |
T |
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| Q |
188 |
ctctcaggttccagattcattttgataaaaaatccttagctctctacaaaacaactaataaatttaattagcattaacgaaaacaaacaaatgcataaca |
287 |
Q |
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| T |
10625474 |
ctctgagatgacatatccattttgataaga--tccttagccctctacaaaacaattagtaaatttagttagcgttaacgaaaacaaataaatgcataaca |
10625377 |
T |
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| Q |
288 |
ataaatcaacttaaatttcaagaaaaaagcttacatgaacca |
329 |
Q |
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| T |
10625376 |
ataaatcaatttaaatttcacgaaaaaagcttacatgaacca |
10625335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 10625754 - 10625847
Alignment:
| Q |
232 |
tacaaaacaactaataaatttaattagcattaacgaaaacaaacaaatgcataacaataaatcaacttaaatttcaagaaaaaagcttacatgaa |
326 |
Q |
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| T |
10625754 |
tacaaaacaactaataaatttagttagcgttaatgaaaacaaataaatgcataacaataaatcaatttaaatttcatg-aaaaagcttacatgaa |
10625847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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