View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19589_low_34 (Length: 373)
Name: NF19589_low_34
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 37 - 361
Target Start/End: Complemental strand, 39352775 - 39352451
Alignment:
| Q |
37 |
aaaggaaaatgcgcaagataagttttcagactcaatttttcattcaaaagcaagattcggtttgtctcacaatactgacagatcttgaagttcttaaagg |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39352775 |
aaaggaaaatgcgcaagataagttttcagacccaatttttcattcaaaagcaagattcggtttgtctcacaatactgacagatcttgaagttcttaaagg |
39352676 |
T |
|
| Q |
137 |
gaagnnnnnnnttaatcaaatttttcccaaatgagtcttttttctccgagaagtattcaaccaactgtacacacttccaatttttccaaagttatctatt |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39352675 |
gaagaaaaaaattaatcaaatttttcccaaatgagtcttttttctccgagaagtattcaaccaactgtacacacttccaatttttccaaagttatctatt |
39352576 |
T |
|
| Q |
237 |
tcctataggatctgagagctacatgatnnnnnnnnnnnnnnnnnnnntatgaagtgtgtagacaaaccgccattaaatcggataggttttacataaaaca |
336 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39352575 |
tcctataggatctgagagctacatgatacaaaaactactgagcaaaatatgaagtgtgtagacaaaccgccattaaatcggataggttttacataaaaca |
39352476 |
T |
|
| Q |
337 |
aacccattcttacctcatcaagtat |
361 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
39352475 |
aattcattcttacctcatcaagtat |
39352451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 39367327 - 39367263
Alignment:
| Q |
293 |
tgtagacaaaccgccattaaatcggataggttttacataaaacaaacccattcttacctcatcaa |
357 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
39367327 |
tgtagacaaaccaacattagatcagataggttttacataaaataacccaattcttacctcatcaa |
39367263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University