View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_38 (Length: 364)
Name: NF19589_low_38
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_38 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 11901331 - 11900968
Alignment:
| Q |
1 |
tctatatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatgcatcatgctgatggtagtgaaacaactact |
100 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11901331 |
tctatatcctggtcttgatgatgagcttgttcttgtggagtcgaacgtaagatcaatgagggatacaatgcatcatgctgatggtagtgaaactactact |
11901232 |
T |
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| Q |
101 |
aagtcaaaacccttttccaaattgaaatcaatggtaattgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttcacttcaggaac |
200 |
Q |
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| T |
11901231 |
aagtcaaaacccttttccaaattgaaatcaatggtaattgagcgtattgagcaaactccaccagagaggtggcttaaaaactttgtttcgcttgaggaac |
11901132 |
T |
|
| Q |
201 |
ttcacattaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgtgaagaacttga |
300 |
Q |
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| T |
11901131 |
ttcacattagagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagttcactcatatcactcactattgagagatgtgaagaacttga |
11901032 |
T |
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| Q |
301 |
tcttgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagt |
364 |
Q |
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| T |
11901031 |
tctcgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagt |
11900968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 11829053 - 11829369
Alignment:
| Q |
5 |
tatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatgcatcatgctgatggtagtgaaacaacta------ |
98 |
Q |
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||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||| ||| ||||| ||| |
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| T |
11829053 |
tatcccggtcttgatgatgagctcgttctggtggagtcgaacgtaagatcaatgagggatacaatgcattatgctgacagtactgaaagcactgaaacat |
11829152 |
T |
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| Q |
99 |
cta------agtcaaaacccttttccaaattgaaatcaatggtaattgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttcact |
192 |
Q |
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||| | ||| ||||||| || |||||||| || |||||||||||||| ||||| ||| | ||||| ||||| ||||||||||||||||||||||| |
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| T |
11829153 |
ctagttcacaatcacaacccttctcgaaattgaagtccatggtaattgagcgcattgaccaatctccaccagagagttggcttaaaaacttcatttcact |
11829252 |
T |
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| Q |
193 |
tcaggaacttcacattaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgtgaa |
292 |
Q |
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| T |
11829253 |
tgaggaacttcacattagagattgttttattttggagtctctaccacaaggtttcaagtttttaagctcactcatatcactttctattgaaagatgtgaa |
11829352 |
T |
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| Q |
293 |
gaacttgatcttgacat |
309 |
Q |
| |
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|||||| ||| ||||| |
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| T |
11829353 |
caacttgttctggacat |
11829369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 12039971 - 12040345
Alignment:
| Q |
2 |
ctatatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatgcatcatgctgatggtagtgaaacaacta--- |
98 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||| ||| |||| ||| |
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| T |
12039971 |
ctatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtcaatgagggatacaatgcattatgctgacagtaccgaaagcactgaaa |
12040070 |
T |
|
| Q |
99 |
---ctaagtcaaaa------cccttttccaaattgaaatcaatggtaattgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttc |
189 |
Q |
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|||| ||| || ||||| ||||||||||| || |||||||||||||||||||| ||| | ||||| |||| |||||||||||||||||||| |
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| T |
12040071 |
attctaattcacaatcacaacccttctccaaattgaagtccatggtaattgagcgtattgaccaatctccaccgaagagatggcttaaaaacttcatttc |
12040170 |
T |
|
| Q |
190 |
acttcaggaacttcacattaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgt |
289 |
Q |
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|||| |||||||||||||| ||||||| | ||| |||||| |||| |||||||| ||||||||| |||||| | ||||||||||||| |||||| |
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| T |
12040171 |
acttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaaacactcactattgaaagatgt |
12040270 |
T |
|
| Q |
290 |
gaagaacttgatcttgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagt |
364 |
Q |
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|| ||||||||||||| |||| || ||| ||| ||||||||| ||| |||||||||||||||||||||||| |
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| T |
12040271 |
caacaacttgatcttgagtcctccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagt |
12040345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 107 - 364
Target Start/End: Original strand, 11861293 - 11861550
Alignment:
| Q |
107 |
aaacccttttccaaattgaaatcaatggtaattgagcgtattgagcaaacgccacctgagaggtggcttaaaaacttcatttcacttcaggaacttcaca |
206 |
Q |
| |
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|||||||| ||||||||||| || |||||| ||||||| || || || | ||||| || || ||||| |||||||||||||||||| |||||||||||| |
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| T |
11861293 |
aaacccttctccaaattgaagtccatggtagttgagcgcatcgaccattctccaccagaaagatggctcaaaaacttcatttcacttgaggaacttcaca |
11861392 |
T |
|
| Q |
207 |
ttaaagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagctcactcatatcactcactattgagagatgtgaagaacttgatcttga |
306 |
Q |
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||| ||||||| ||| |||| |||| ||||||||||||||||||||||||| |||||| | ||||||||||||| |||||| |||||||||||||||| |
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| T |
11861393 |
ttagagattgttttaatttagcgtctctaccacaaggtttcaagtctttgagttcactccaaacactcactattgaaagatgtcaagaacttgatcttga |
11861492 |
T |
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| Q |
307 |
catctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagt |
364 |
Q |
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|| || ||| ||| ||||||||| ||| |||||||||||||||||||||||| |
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| T |
11861493 |
caaacatccaaatgagtgggagggtctgaaaaaccttcgttctcttacattaaggagt |
11861550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 11861182 - 11861250
Alignment:
| Q |
2 |
ctatatcctggtcttgatgatgagctcgttctggtggagtcaaatgtaagatcgatgagggatacaatg |
70 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||| | |||| ||| |||| |||||||||| |
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| T |
11861182 |
ctatatcccggtcttgatgatgagctcgttgtggtggagtcgagcgtaatatcaatgaaggatacaatg |
11861250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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