View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19589_low_39 (Length: 355)

Name: NF19589_low_39
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19589_low_39
NF19589_low_39
[»] chr8 (2 HSPs)
chr8 (5-352)||(23361272-23361619)
chr8 (116-190)||(23555848-23555922)
[»] chr3 (4 HSPs)
chr3 (24-215)||(1107761-1107952)
chr3 (70-190)||(1050648-1050768)
chr3 (70-190)||(1077550-1077670)
chr3 (70-190)||(1091429-1091549)
[»] scaffold0090 (1 HSPs)
scaffold0090 (78-191)||(8048-8161)
[»] chr5 (2 HSPs)
chr5 (116-191)||(28420127-28420202)
chr5 (267-329)||(28433239-28433301)
[»] chr4 (1 HSPs)
chr4 (94-138)||(31740884-31740928)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 352
Target Start/End: Complemental strand, 23361619 - 23361272
Alignment:
Q  5 tagaaatataagttacttttgttacttacatgcccaataagattgtagctgtgatttgaataggaaagtcctttatttctctttccatttataatctcta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23361619 tagaaatataagttacttttgttacttacatgcccaataagattgtagctgtgatttgaataggaaagtcctttatttctctttccatttataatctcta 23361520  T
Q  105 ataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcgggtgccatataaccactgaaagaaaataacaaatg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23361519 ataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcaggtgccatataaccactgaaagaaaataacaaatg 23361420  T
Q  205 tattaatttgaggttctatttatgtataatatagttgtaaaatcacttacatattataatatatacttactatgtaccaacaactctacttgtagttcct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23361419 tattaatttgaggttctatttatgtataatatagttgtaaaatcacttacatattataatatatacttactatgtaccaacaactctacttgtagttcct 23361320  T
Q  305 tgaatctgatcacctccacacattcgagctaggccgaaatcagatatt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23361319 tgaatctgatcacctccacacattcgagctaggccgaaatcagatatt 23361272  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 23555922 - 23555848
Alignment:
Q  116 ccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcgggtgccatataaccactgaaa 190  Q
    ||||| ||| ||||||| ||||| || |||||||  |||||||| |||||||| |||||||||||||||||||||    
T  23555922 ccaaaactaaatacatctgatttaatagagaataatccatcgatggcatattcaggtgccatataaccactgaaa 23555848  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 1107952 - 1107761
Alignment:
Q  24 tgttacttacatgcccaataagattgtagctgtgatttgaataggaaagtcctttatttctctttccatttataatctctaataataaaattccaaagct 123  Q
    ||||||| |||||||||| ||||||||   |||   ||| ||| ||||| ||||||||| || ||||| ||| ||||||||  | ||| || ||||||||    
T  1107952 tgttactcacatgcccaacaagattgtgtttgtcgcttggatacgaaagccctttatttttccttccacttacaatctctagcagtaatatgccaaagct 1107853  T
Q  124 atatacatcagatttgatggagaatatcccatcgatcgcatattcgggtgccatataaccactgaaagaaaataacaaatgtattaatttga 215  Q
    | ||||||| ||||| |||||||||| |||||| || ||||| ||||| ||||||||||||||| || ||||| |||||||  |||||||||    
T  1107852 aaatacatcggattttatggagaataacccatcaatggcatactcgggagccatataaccactggaaaaaaattacaaatgagttaatttga 1107761  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 1050768 - 1050648
Alignment:
Q  70 aagtcctttatttctctttccatttataatctctaataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcg 169  Q
    ||||||||||||| ||| |||| ||| ||||||||  ||||| |  ||||||||| |||||||||||||  ||||||| | |||||| || ||||||||     
T  1050768 aagtcctttatttttctgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaaaagcccatcaatggcatattct 1050669  T
Q  170 ggtgccatataaccactgaaa 190  Q
    || ||||||||||||||||||    
T  1050668 ggagccatataaccactgaaa 1050648  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 1077670 - 1077550
Alignment:
Q  70 aagtcctttatttctctttccatttataatctctaataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcg 169  Q
    ||||||||||||| | | |||| ||| ||||||||  ||||| |  ||||||||| |||||||||||||  |||||||||  ||||| || ||||||||     
T  1077670 aagtcctttatttttatgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaatagtccatcaatggcatattct 1077571  T
Q  170 ggtgccatataaccactgaaa 190  Q
    || ||||||||||||||||||    
T  1077570 ggagccatataaccactgaaa 1077550  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 1091549 - 1091429
Alignment:
Q  70 aagtcctttatttctctttccatttataatctctaataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcg 169  Q
    ||||||||||||| ||| |||| ||| |||||||| |||||| |  ||||||||| |||||||||||||  | || ||||  ||||| || || |||||     
T  1091549 aagtcctttatttttctgtccacttacaatctctagtaataatacaccaaagctaaatacatcagattttgtagaaaatagtccatcaatggcgtattct 1091450  T
Q  170 ggtgccatataaccactgaaa 190  Q
    || ||||||||||||||||||    
T  1091449 ggagccatataaccactgaaa 1091429  T

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Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 8048 - 8161
Alignment:
Q  78 tatttctctttccatttataatctctaataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcgggtgccat 177  Q
    ||||| |||||||| | ||||| ||||||||||| |  ||||||||| ||||||| |||||||| || ||||  |||||  | |||||||| ||||||||    
T  8048 tatttttctttccactgataatttctaataataatacgccaaagctaaatacatctgatttgatagaaaataatccatcagtggcatattcaggtgccat 8147  T
Q  178 ataaccactgaaag 191  Q
    ||| || |||||||    
T  8148 atagccgctgaaag 8161  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 28420202 - 28420127
Alignment:
Q  116 ccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcgggtgccatataaccactgaaag 191  Q
    ||||||||| ||||||| ||||| || ||||| |  ||||  ||| |||||||||||||||||||||| |||||||    
T  28420202 ccaaagctaaatacatctgatttaatagagaaaagtccatgaatcacatattcgggtgccatataaccgctgaaag 28420127  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 28433301 - 28433239
Alignment:
Q  267 atacttactatgtaccaacaactctacttgtagttccttgaatctgatcacctccacacattc 329  Q
    ||||||||||||||||||| | |||||||||  | |||| |||  ||||||||||||||||||    
T  28433301 atacttactatgtaccaactattctacttgtcttcccttcaattagatcacctccacacattc 28433239  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 31740928 - 31740884
Alignment:
Q  94 tataatctctaataataaaattccaaagctatatacatcagattt 138  Q
    |||||| ||||| |||||||||||||||||| | |||||||||||    
T  31740928 tataatttctaacaataaaattccaaagctaaaaacatcagattt 31740884  T

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