View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_53 (Length: 261)
Name: NF19589_low_53
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_53 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 11900740 - 11900985
Alignment:
| Q |
16 |
taacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagt |
115 |
Q |
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| T |
11900740 |
taacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagt |
11900839 |
T |
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| Q |
116 |
ttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaattt |
215 |
Q |
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| T |
11900840 |
ttgccaagggaagtgaggttacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaattt |
11900939 |
T |
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| Q |
216 |
cccttggaagggacttgagttttggaatactccttaatgtaagaga |
261 |
Q |
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| T |
11900940 |
cccttggaagggacttgagtttgggaatactccttaatgtaagaga |
11900985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 11829679 - 11829434
Alignment:
| Q |
16 |
taacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||| |||||||||||||||||||||||| ||| ||| |
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| T |
11829679 |
taacaaagggcaatccataataatcaaagtatttagagactgaagcatttccattcctttgggaagagaatctaaatttctgcattcagaaagaaccagt |
11829580 |
T |
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| Q |
116 |
ttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaattt |
215 |
Q |
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| T |
11829579 |
ctttcaagtgaagtgaggttacctatactttctggtaaagaagttaaaccatgacaatcataaatcctcaagtctttcaaagttttcacgttttcaactc |
11829480 |
T |
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| Q |
216 |
cccttggaagggacttgagttttggaatactccttaatgtaagaga |
261 |
Q |
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| T |
11829479 |
cccatggaagggacttcagttttggaatactccttaatgtaagaga |
11829434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 11861778 - 11861533
Alignment:
| Q |
16 |
taacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagt |
115 |
Q |
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| T |
11861778 |
taacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaatctaactttctgcattcagaaagaaccagt |
11861679 |
T |
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| Q |
116 |
ttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaattt |
215 |
Q |
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|| |||| |||||||| |||||||| ||||||| || ||||| |||||| |||||||||| |||||| || | ||||| ||||| ||||||| | |
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| T |
11861678 |
ttttcaagtgaagtgaggttacctatactttctggtaaaaaagttaaaccatgacaatcataaatccttaagtctttcaaagtgttcacattttcaactc |
11861579 |
T |
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| Q |
216 |
cccttggaagggacttgagttttggaatactccttaatgtaagaga |
261 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11861578 |
cccatggaagggacttaagttttggaatactccttaatgtaagaga |
11861533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 12040573 - 12040328
Alignment:
| Q |
16 |
taacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagt |
115 |
Q |
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|||||| ||||| ||| ||||||||||||| ||||||||||||||| ||||||| || ||||||||| ||||||| ||||||||||| |||| ||| ||| |
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| T |
12040573 |
taacaacgggcagtccctaataatcaaagtctttagagactgtagcgtttccattcctttgggcagagaatctaactttctgcattccgaaagaaccagt |
12040474 |
T |
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| Q |
116 |
ttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaattt |
215 |
Q |
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|| |||| |||| || || | ||||||||| | || ||||| ||| |||||||||||||||||||| | || |||||||||| | || | | |
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| T |
12040473 |
ttttcaagtgaagcgaagttgcatatgctttccgggagagaagttaaaccctggcaatcataaagccttaagacttgtaaagagttcacaatctcgaatc |
12040374 |
T |
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| Q |
216 |
cccttggaagggacttgagttttggaatactccttaatgtaagaga |
261 |
Q |
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| T |
12040373 |
cctgaggaagggacttgagatttggaatactccttaatgtaagaga |
12040328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 261
Target Start/End: Complemental strand, 11733410 - 11733223
Alignment:
| Q |
74 |
ttgggcagataatctaaatttctgcattcagaaataactagtttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaat |
173 |
Q |
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| T |
11733410 |
ttgggcagagaatccatacttctgcattcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaactagggcaat |
11733311 |
T |
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| Q |
174 |
cataaagccttaaatcatgcaaagagttcaagttttcaatttcccttggaagggacttgagttttggaatactccttaatgtaagaga |
261 |
Q |
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| T |
11733310 |
cataaatccttaaatctttcaatgatttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaaagtaagaga |
11733223 |
T |
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