View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_57 (Length: 250)
Name: NF19589_low_57
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 26335882 - 26336096
Alignment:
| Q |
21 |
gagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgcatatggtggtacaggtgtattt |
120 |
Q |
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| T |
26335882 |
gagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgcatatggtggtacaggtgtattt |
26335981 |
T |
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| Q |
121 |
gatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtctatactctctcagatatcaccaattcta |
220 |
Q |
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| T |
26335982 |
gatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccaaaaaaatgtctatactctctcagatatcaccaattcta |
26336081 |
T |
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| Q |
221 |
ttgcttatgtctctg |
235 |
Q |
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||||||||||||||| |
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| T |
26336082 |
ttgcttatgtctctg |
26336096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 26322899 - 26323077
Alignment:
| Q |
55 |
aacatagtgcctgaacatgatttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaaccc |
154 |
Q |
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||||| ||| || ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
26322899 |
aacattgtgtctaaacattatttgaagtatgggatgaactttgcatatggtggcacaggtgtatttgatacatttacttcaggaccaaatatgacagccc |
26322998 |
T |
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| Q |
155 |
aaattgattccttcaaccaagtcatccnnnnnnntgtctatactctctcagatatcaccaattctattgcttatgtctc |
233 |
Q |
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| T |
26322999 |
aaatcgattccttcaaccaactcattcaagaaaatgtctatactccttcagatctcagcaaagctattgcttatgtctc |
26323077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 26328174 - 26328385
Alignment:
| Q |
24 |
atcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgat |
123 |
Q |
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||||||||||| |||||| |||||| ||| || | ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26328174 |
atcaccaatcactcacaatttatggaatactaatacagtgcctaagcatgatttgaagtatgggatgaactttgcctatggtggtacaggtgtatttgaa |
26328273 |
T |
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| Q |
124 |
acattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtctatactctctcagatatcaccaattctattg |
223 |
Q |
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| T |
26328274 |
atatcttctacaggaccaaatgtgacaacacaaatcaattccttaatcaaactcattcaagaaaatgtatacactccctcagatatcaccaaatctatag |
26328373 |
T |
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| Q |
224 |
cttatgtctctg |
235 |
Q |
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|||||||||||| |
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| T |
26328374 |
cttatgtctctg |
26328385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 42224184 - 42224133
Alignment:
| Q |
74 |
atttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgatac |
125 |
Q |
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||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||| |
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| T |
42224184 |
atttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatac |
42224133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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