View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_64 (Length: 243)
Name: NF19589_low_64
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11682799 - 11682575
Alignment:
| Q |
1 |
actgaatcagaaatcattagtgggaatattatgaaaatgtcgaaatctttcaccaaaagaagggacgcagatgcaattgctttggctattaagtccctac |
100 |
Q |
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| T |
11682799 |
actgaatcagaaatcattagtgggaatattatgaaaatgtcgaaatctttcaccaaaagaagggacgcagatgcaattgctatggctattaagtccctac |
11682700 |
T |
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| Q |
101 |
ggaaagaggcgaggagttggttcaatgaagacgatactggtgcagattctgggagtgattgtccatatgcaaaagcttctgcttggtattttgtaactta |
200 |
Q |
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| T |
11682699 |
ggaaagaggcgaggagttggttcaatgaagacaatactggtgcagattctgggagtgattgtccatatgcaaaagcttctgcttggtattttgttactta |
11682600 |
T |
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| Q |
201 |
ccatcatagttactatggtctgtac |
225 |
Q |
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| T |
11682599 |
ccatcatagttactatggtttgtac |
11682575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11675312 - 11675088
Alignment:
| Q |
1 |
actgaatcagaaatcattagtgggaatattatgaaaatgtcgaaatctttcaccaaaagaagggacgcagatgcaattgctttggctattaagtccctac |
100 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||| | | ||||||| |
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| T |
11675312 |
actgaatcagaaatcctaagtgggaatattatgaaaatgtcgaaatctttcaccaaaagaagggatgcagatgcgattactatggctgtaaggtccctaa |
11675213 |
T |
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| Q |
101 |
ggaaagaggcgaggagttggttcaatgaagacgatactggtgcagattctgggagtgattgtccatatgcaaaagcttctgcttggtattttgtaactta |
200 |
Q |
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| T |
11675212 |
ggaaagaggcgaggagttggttcaatgacggtgcggctgatgtagatgctgggagtgatgatgcttatgcaaaagcttctgcttggtactatgtttctta |
11675113 |
T |
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| Q |
201 |
ccatcatagttactatggtctgtac |
225 |
Q |
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| T |
11675112 |
ccatcatagttactatggtttgtac |
11675088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11640091 - 11640315
Alignment:
| Q |
1 |
actgaatcagaaatcattagtgggaatattatgaaaatgtcgaaatctttcaccaaaagaagggacgcagatgcaattgctttggctattaagtccctac |
100 |
Q |
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||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||| || ||||| ||| || ||||| ||| ||||||| |
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| T |
11640091 |
actgaatcagaaatcctcagtgggaatattatgaaaatggctaaatctttcaccaaaagaagggatgcggatgctattactatggctgttaggtccctaa |
11640190 |
T |
|
| Q |
101 |
ggaaagaggcgaggagttggttcaatgaagacgatactggtgcagattctgggagtgattgtccatatgcaaaagcttctgcttggtattttgtaactta |
200 |
Q |
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| T |
11640191 |
gaaaagaggcgaggagttggttcaatgatggcagtgccagtgttgattctggaagtgatgatgcatatgcaaaagcttctgcttggtactatgttactta |
11640290 |
T |
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| Q |
201 |
ccatcatagttactatggtctgtac |
225 |
Q |
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||||||||||||||||||| ||||| |
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| T |
11640291 |
ccatcatagttactatggtttgtac |
11640315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11631329 - 11631553
Alignment:
| Q |
1 |
actgaatcagaaatcattagtgggaatattatgaaaatgtcgaaatctttcaccaaaagaagggacgcagatgcaattgctttggctattaagtccctac |
100 |
Q |
| |
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|||||| |||||||| | ||||| ||||||||||||||||| ||||||||||| |||| |||||| || ||||| ||| || |||| | | ||||||| |
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| T |
11631329 |
actgaagcagaaatcctaagtggaaatattatgaaaatgtcaaaatctttcacgaaaaaaagggatgcggatgcgattactatggccgtaaggtccctaa |
11631428 |
T |
|
| Q |
101 |
ggaaagaggcgaggagttggttcaatgaagacgatactggtgcagattctgggagtgattgtccatatgcaaaagcttctgcttggtattttgtaactta |
200 |
Q |
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| T |
11631429 |
ggaaagaggcaaggagttggttcactgacagcggggctggtgtagattctgggagtgatgatgcatatgcaaaagcttctgcttggtactatgttactta |
11631528 |
T |
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| Q |
201 |
ccatcatagttactatggtctgtac |
225 |
Q |
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| T |
11631529 |
ccatcatagttactatggtttgtac |
11631553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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