View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_65 (Length: 243)
Name: NF19589_low_65
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_65 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 3803792 - 3803552
Alignment:
| Q |
3 |
aaggcgtatgggaatcctgtcataagagtaattcaggtcttcgttgctgccgctaggaagtggaatgttgaacctgccaaggaggatcaactttacgagg |
102 |
Q |
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| T |
3803792 |
aaggcgtgtgggaatcctgtcataagagtaattcaggtcttcattgctgccgctaggaagtggaatgttgaacctgccaaggaggatcaactttacgagg |
3803693 |
T |
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| Q |
103 |
ttgacggccatgaatccgccatcaaaggaagcagaaagattctgcactcccaagatataaggtacatatgttactgcattcgaaaactagcaagtataac |
202 |
Q |
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| T |
3803692 |
ttgacggccatgaatccgccatcaaaggaagcagaaagattctgcactctcaagatataaggtacatatgttactgcattcgaaaactagcaagtataac |
3803593 |
T |
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| Q |
203 |
atatataatatatttaattctatgcattttcagtgaaagta |
243 |
Q |
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| T |
3803592 |
atatataatatatttaattctatgcattttcagtgaaagta |
3803552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 396856 - 397067
Alignment:
| Q |
3 |
aaggcgtatgggaatcctgtcataagagtaattcaggtcttcgttgctgccgctaggaagtggaatgttgaacctgccaaggaggatcaactttacgagg |
102 |
Q |
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| T |
396856 |
aaggcgtatggcaatcctgtcataagagtaatccaggtctttgttgctgccactaggaagtggaatgttgaacccgccaaggaggaccaactttacgagg |
396955 |
T |
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| Q |
103 |
ttgacggccatgaatccgccatcaaaggaagcagaaagattctgcactcccaagatataaggtacatatgttactgcattcgaaaactagcaagtataac |
202 |
Q |
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| T |
396956 |
ttgacggcaatgtatccgccatcaaaggaagcagaaagattcttcactcccaagatataaggtacatatgttgctgcattcaaaaactagcaagtataac |
397055 |
T |
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| Q |
203 |
atatataatata |
214 |
Q |
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| T |
397056 |
atatataatata |
397067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 397087 - 397115
Alignment:
| Q |
214 |
atttaattctatgcattttcagtgaaagt |
242 |
Q |
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| T |
397087 |
atttaattctatgcattttcagtgaaagt |
397115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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