View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_67 (Length: 238)
Name: NF19589_low_67
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46129538 - 46129318
Alignment:
| Q |
1 |
cagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacttgctaaagaacattaagg |
100 |
Q |
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| T |
46129538 |
cagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacatgctaaagaacattaagg |
46129439 |
T |
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| Q |
101 |
gtcgtccgacatgcattatatgtagctctagctctaacatggaccnnnnnnnncaacagaattctgttaaagcctcttatattggcaattggtaccgctc |
200 |
Q |
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| T |
46129438 |
gtcgtccgacatgcattatatgtagctctagctctaacatggaccttttttttcaacagaattctgttaaagcctcttatattggcaattggtaccgctc |
46129339 |
T |
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| Q |
201 |
cttaatcatggctatgctctt |
221 |
Q |
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| T |
46129338 |
cttaatcatggctatgctctt |
46129318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 46702267 - 46702126
Alignment:
| Q |
86 |
taaagaacattaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccnnnnnnnnc------aacagaattctgttaaagcctctta |
179 |
Q |
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| T |
46702267 |
taaacaacattaagggtcgtccgacatgcattatatgtagctctaactctaaaatggactttttttttctctctcaatagaattctgataaagcctctta |
46702168 |
T |
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| Q |
180 |
tattggcaattggtaccgctccttaatcatggctatgctctt |
221 |
Q |
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| T |
46702167 |
tattggcaattggtatcgctccttaatcatggctatgctctt |
46702126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 46702323 - 46702243
Alignment:
| Q |
1 |
cagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgac |
81 |
Q |
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| T |
46702323 |
cagtaagccctgtttcattgcaggaatggtttgcgcctgttaaacaccattaagagtaaacaacattaagggtcgtccgac |
46702243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 46123395 - 46123358
Alignment:
| Q |
108 |
gacatgcattatatgtagctctagctctaacatggacc |
145 |
Q |
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| T |
46123395 |
gacatgcattatatgtagctctaggtctaaaatggacc |
46123358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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