View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19589_low_77 (Length: 213)
Name: NF19589_low_77
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19589_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26087789 - 26087599
Alignment:
| Q |
1 |
aattaaagcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26087789 |
aattaaagcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaaggtgcagctgaagcaggtgatatagatctcctctacacagtaatt |
26087690 |
T |
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| Q |
101 |
caagatgatccatacattttggagcgcatagatttaataccatttgttgaaactcctttacatacggctgcatctatgggtcatcttcaat |
191 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26087689 |
caagatgatccatacattttggagcgtatagatttaataccatttgttgaaactcctttacatacggctgcatctatgggtcatcttcaat |
26087599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 28865031 - 28865212
Alignment:
| Q |
7 |
agcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagat |
106 |
Q |
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|||||||||||||||| |||||| ||||||| ||||||||||| |||| ||||||||| | ||||||||| || |||||||||||||||||||||||||| |
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| T |
28865031 |
agcttcaaacatgaactcaaatgccatatatggttttaaccgaatgaatgctgcagctcatgcaggtgatgtaaatctcctctacacagtaattcaagat |
28865130 |
T |
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| Q |
107 |
gatccatacattttggagcgcatagatttaataccatttgttgaaactcctttacatacggctgcatctatgggtcatcttc |
188 |
Q |
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| T |
28865131 |
gatccatacgttttggagcgtatagatttaataccatttgttgaaactcctttacatatcgctgcatctatgggtcaccttc |
28865212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 30647919 - 30648056
Alignment:
| Q |
47 |
cgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatttg |
146 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
30647919 |
cgattgaatgctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcatatagattcaataccatttg |
30648018 |
T |
|
| Q |
147 |
ttgaaactcctttacatacggctgcatctatgggtcat |
184 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||| |
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| T |
30648019 |
ttgaaactcctttacatattgctgcatccatgggtcat |
30648056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 14726346 - 14726487
Alignment:
| Q |
45 |
accgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatt |
144 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | || |
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| T |
14726346 |
accgattgaaagctgcagctctaacaggtgatatagatctcctctacacagtaattcaagatgatccatccattttggagcatatagatttaataacttt |
14726445 |
T |
|
| Q |
145 |
tgttgaaactcctttacatacggctgcatctatgggtcatct |
186 |
Q |
| |
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| T |
14726446 |
tgttgaaactcctttacatactgctgcatctatgggtcatct |
14726487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 26088210 - 26088349
Alignment:
| Q |
45 |
accgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatt |
144 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||| |||| |
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| T |
26088210 |
accgattgaaagctgcagctcaaacaggtgatatagatctcctctactcagtaattcaagatgatccatccattttggagaatatagatgtaatatcatt |
26088309 |
T |
|
| Q |
145 |
tgttgaaactcctttacatacggctgcatctatgggtcat |
184 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| |
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| T |
26088310 |
tgttgaaactcctttacatattgctgcatctttgggtcat |
26088349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 28859826 - 28859959
Alignment:
| Q |
7 |
agcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagat |
106 |
Q |
| |
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||||||||||||||||||||||| ||||| | |||||||||||||||| | ||||||| | ||||||||| |||||||||| |||||||||||| ||||| |
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| T |
28859826 |
agcttcaaacatgaacacaaatgccatatttggttttaaccgattgaatgatgcagctcatgcaggtgatgtagatctcctatacacagtaatttaagat |
28859925 |
T |
|
| Q |
107 |
gatccatacattttggagcgcatagatttaatac |
140 |
Q |
| |
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||||||||| || ||||||| ||||||||||||| |
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| T |
28859926 |
gatccatacgttatggagcgtatagatttaatac |
28859959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 31040934 - 31040792
Alignment:
| Q |
49 |
attgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatttgtt |
148 |
Q |
| |
|
|||||| | ||||||| ||| |||||||||| | || ||||| ||| ||||| | || |||||||| ||||||| ||||||||||| ||||||||| |
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| T |
31040934 |
attgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaattccatttgtt |
31040835 |
T |
|
| Q |
149 |
gaaactcctttacatacggctgcatctatgggtcatcttcaat |
191 |
Q |
| |
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||||||||| | |||| |||||||||||||| ||| |||||| |
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| T |
31040834 |
gaaactcctctgcatatagctgcatctatgggacatgttcaat |
31040792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 4818854 - 4819000
Alignment:
| Q |
45 |
accgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatt |
144 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
4818854 |
accgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaataccatt |
4818953 |
T |
|
| Q |
145 |
tgttgaaactcctttacatacggctgcatctatgggtcatcttcaat |
191 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||| |||| |
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|
| T |
4818954 |
tgttgaaactcctttgcatattgctgcatctatgggtcatctccaat |
4819000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 6612520 - 6612382
Alignment:
| Q |
53 |
aaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatttgttgaaa |
152 |
Q |
| |
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|||||||||||| ||||||| | ||||||||||||||| |||||||| | |||||||||| ||| |||||| ||||||| |||||||||||||||| |
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| T |
6612520 |
aaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgatgatgatccattcatcctggagcatatagattcgataccatttgttgaaa |
6612421 |
T |
|
| Q |
153 |
ctcctttacatacggctgcatctatgggtcatcttcaat |
191 |
Q |
| |
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|||||||||||| ||||| |||||||||||| |||| |
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|
| T |
6612420 |
ctcctttacatatatctgcagatatgggtcatctccaat |
6612382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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