View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19589_low_9 (Length: 629)

Name: NF19589_low_9
Description: NF19589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19589_low_9
NF19589_low_9
[»] chr6 (29 HSPs)
chr6 (80-610)||(17770463-17770993)
chr6 (328-610)||(1575690-1575956)
chr6 (390-610)||(696442-696663)
chr6 (410-501)||(696622-696714)
chr6 (421-501)||(1575927-1576007)
chr6 (421-481)||(31624122-31624182)
chr6 (410-501)||(23271999-23272088)
chr6 (522-610)||(23272048-23272135)
chr6 (431-479)||(769180-769228)
chr6 (422-465)||(6647420-6647463)
chr6 (428-471)||(34403894-34403937)
chr6 (422-480)||(10616692-10616750)
chr6 (422-480)||(20368159-20368217)
chr6 (428-481)||(3738108-3738161)
chr6 (428-472)||(4080955-4080999)
chr6 (428-472)||(5566164-5566208)
chr6 (428-472)||(33887869-33887913)
chr6 (446-481)||(26709793-26709828)
chr6 (422-480)||(2263225-2263283)
chr6 (556-610)||(2455817-2455871)
chr6 (423-469)||(4246444-4246490)
chr6 (353-411)||(8331699-8331757)
chr6 (422-472)||(28641736-28641786)
chr6 (428-481)||(7931704-7931757)
chr6 (427-480)||(8035127-8035180)
chr6 (428-469)||(9667975-9668016)
chr6 (427-480)||(33832252-33832305)
chr6 (428-472)||(2027393-2027437)
chr6 (428-472)||(22743520-22743564)
[»] chr7 (17 HSPs)
chr7 (328-610)||(15740420-15740686)
chr7 (390-610)||(43219653-43219874)
chr7 (438-610)||(11047916-11048088)
chr7 (410-501)||(43219602-43219694)
chr7 (410-501)||(11048047-11048139)
chr7 (421-501)||(15740369-15740449)
chr7 (422-480)||(19719039-19719097)
chr7 (427-480)||(39967958-39968012)
chr7 (428-476)||(20888377-20888425)
chr7 (427-481)||(34035955-34036010)
chr7 (427-481)||(9038150-9038203)
chr7 (428-470)||(25511665-25511707)
chr7 (428-469)||(36598346-36598387)
chr7 (436-477)||(43250681-43250722)
chr7 (429-469)||(6857329-6857369)
chr7 (428-472)||(22551392-22551436)
chr7 (422-470)||(25596066-25596114)
[»] chr3 (40 HSPs)
chr3 (250-487)||(5396075-5396295)
chr3 (438-610)||(39723249-39723421)
chr3 (162-313)||(5391726-5391869)
chr3 (410-501)||(39723198-39723290)
chr3 (422-487)||(5391912-5391977)
chr3 (427-472)||(53762381-53762426)
chr3 (436-481)||(45541618-45541663)
chr3 (422-469)||(3044249-3044296)
chr3 (422-481)||(34954115-34954173)
chr3 (422-481)||(39602188-39602247)
chr3 (422-481)||(54837012-54837071)
chr3 (422-476)||(52440645-52440699)
chr3 (422-463)||(25925775-25925816)
chr3 (422-471)||(36101601-36101650)
chr3 (422-471)||(36139911-36139960)
chr3 (553-610)||(39602219-39602276)
chr3 (428-480)||(29427624-29427676)
chr3 (427-470)||(5166361-5166404)
chr3 (422-480)||(21367700-21367759)
chr3 (422-472)||(2152165-2152215)
chr3 (422-472)||(3015830-3015880)
chr3 (427-480)||(26878238-26878292)
chr3 (430-480)||(34707475-34707525)
chr3 (422-460)||(40665462-40665500)
chr3 (422-480)||(53952081-53952139)
chr3 (422-480)||(54180759-54180817)
chr3 (427-468)||(13804815-13804856)
chr3 (428-469)||(20192596-20192637)
chr3 (427-472)||(21754755-21754800)
chr3 (425-481)||(23816254-23816311)
chr3 (428-481)||(27290879-27290932)
chr3 (525-610)||(28622008-28622093)
chr3 (428-469)||(37273173-37273214)
chr3 (428-469)||(42745077-42745118)
chr3 (422-478)||(23808045-23808101)
chr3 (429-481)||(24624250-24624302)
chr3 (545-601)||(34924556-34924612)
chr3 (422-480)||(36769950-36770005)
chr3 (428-472)||(38971297-38971341)
chr3 (428-480)||(49465644-49465696)
[»] chr8 (28 HSPs)
chr8 (127-196)||(41066752-41066821)
chr8 (202-261)||(41066667-41066729)
chr8 (423-481)||(3254259-3254317)
chr8 (427-481)||(779039-779093)
chr8 (427-480)||(1930073-1930127)
chr8 (422-480)||(8629489-8629547)
chr8 (428-469)||(9835890-9835931)
chr8 (422-478)||(3161604-3161660)
chr8 (422-478)||(12851209-12851265)
chr8 (428-472)||(42215293-42215337)
chr8 (428-479)||(10383924-10383975)
chr8 (422-481)||(11770989-11771048)
chr8 (428-471)||(41606891-41606934)
chr8 (427-469)||(11569447-11569489)
chr8 (422-480)||(13459678-13459736)
chr8 (422-464)||(20672783-20672825)
chr8 (422-472)||(30389132-30389182)
chr8 (429-470)||(2594986-2595027)
chr8 (422-463)||(11118993-11119034)
chr8 (428-469)||(11185260-11185301)
chr8 (428-465)||(12361231-12361268)
chr8 (427-472)||(43368687-43368732)
chr8 (436-480)||(2458545-2458589)
chr8 (422-462)||(3600735-3600775)
chr8 (422-454)||(6525625-6525657)
chr8 (428-472)||(7918433-7918477)
chr8 (422-462)||(14339602-14339642)
chr8 (420-472)||(14949897-14949949)
[»] chr1 (41 HSPs)
chr1 (422-480)||(10744334-10744392)
chr1 (428-479)||(35925729-35925780)
chr1 (428-480)||(37811891-37811943)
chr1 (424-480)||(4549883-4549939)
chr1 (422-470)||(6292526-6292574)
chr1 (520-610)||(2294882-2294972)
chr1 (422-472)||(10199395-10199445)
chr1 (422-480)||(37842334-37842392)
chr1 (427-472)||(38170677-38170722)
chr1 (428-501)||(6262059-6262128)
chr1 (427-471)||(10854771-10854815)
chr1 (436-480)||(38001643-38001687)
chr1 (422-477)||(4699597-4699652)
chr1 (536-603)||(7137014-7137081)
chr1 (422-481)||(11639394-11639453)
chr1 (422-469)||(11695894-11695941)
chr1 (422-469)||(28689442-28689489)
chr1 (422-469)||(30815643-30815690)
chr1 (428-463)||(47917275-47917310)
chr1 (427-481)||(1565513-1565567)
chr1 (422-476)||(7218057-7218111)
chr1 (428-470)||(7262507-7262549)
chr1 (426-472)||(24460394-24460440)
chr1 (428-478)||(31118082-31118132)
chr1 (422-480)||(31517719-31517777)
chr1 (422-472)||(37593671-37593721)
chr1 (422-480)||(38247032-38247090)
chr1 (427-472)||(4445746-4445791)
chr1 (427-480)||(4481968-4482021)
chr1 (436-469)||(4549714-4549747)
chr1 (427-464)||(5886989-5887026)
chr1 (428-469)||(27140517-27140558)
chr1 (428-469)||(29723528-29723569)
chr1 (427-472)||(39270412-39270457)
chr1 (428-481)||(45394154-45394207)
chr1 (427-463)||(5276331-5276367)
chr1 (428-472)||(12477274-12477318)
chr1 (422-462)||(30257716-30257756)
chr1 (422-470)||(34290269-34290317)
chr1 (428-480)||(35669011-35669063)
chr1 (422-454)||(38882917-38882949)
[»] chr5 (25 HSPs)
chr5 (522-573)||(41059904-41059955)
chr5 (427-470)||(15406001-15406044)
chr5 (422-480)||(42100344-42100403)
chr5 (427-481)||(7674686-7674740)
chr5 (422-480)||(10125697-10125755)
chr5 (422-472)||(13604836-13604886)
chr5 (422-472)||(17258870-17258920)
chr5 (427-472)||(21768184-21768229)
chr5 (428-480)||(499710-499762)
chr5 (559-610)||(11064442-11064493)
chr5 (422-481)||(18857376-18857435)
chr5 (433-480)||(39248143-39248190)
chr5 (422-469)||(41957441-41957488)
chr5 (428-470)||(1899193-1899235)
chr5 (427-481)||(2568696-2568750)
chr5 (533-610)||(7984952-7985030)
chr5 (427-469)||(22020357-22020399)
chr5 (428-469)||(2880537-2880578)
chr5 (421-478)||(3977340-3977397)
chr5 (533-601)||(12425555-12425623)
chr5 (422-470)||(14331400-14331448)
chr5 (428-480)||(17368715-17368767)
chr5 (533-601)||(25461334-25461402)
chr5 (428-472)||(37794685-37794729)
chr5 (445-481)||(42646947-42646983)
[»] chr2 (36 HSPs)
chr2 (423-481)||(5902527-5902585)
chr2 (428-481)||(1647275-1647328)
chr2 (422-480)||(40682373-40682432)
chr2 (428-479)||(44438819-44438870)
chr2 (430-480)||(787373-787423)
chr2 (422-476)||(35538674-35538728)
chr2 (422-476)||(35557108-35557162)
chr2 (428-480)||(28677638-28677690)
chr2 (431-479)||(40158760-40158808)
chr2 (428-480)||(43530090-43530142)
chr2 (445-480)||(1801724-1801759)
chr2 (422-481)||(44606088-44606147)
chr2 (446-480)||(4350747-4350781)
chr2 (422-504)||(7035525-7035604)
chr2 (422-472)||(12313160-12313210)
chr2 (428-470)||(29316764-29316806)
chr2 (422-480)||(35378511-35378569)
chr2 (422-472)||(35379003-35379053)
chr2 (428-470)||(43827942-43827984)
chr2 (427-472)||(680541-680586)
chr2 (422-475)||(1056113-1056166)
chr2 (422-481)||(7928275-7928336)
chr2 (427-472)||(33256778-33256823)
chr2 (429-478)||(33941949-33941998)
chr2 (428-469)||(34652026-34652067)
chr2 (428-481)||(41809223-41809276)
chr2 (428-480)||(41812070-41812123)
chr2 (533-609)||(680487-680563)
chr2 (428-468)||(1939323-1939363)
chr2 (427-479)||(2091014-2091066)
chr2 (428-472)||(10285899-10285943)
chr2 (427-475)||(10567095-10567143)
chr2 (533-601)||(12464491-12464559)
chr2 (428-480)||(38809365-38809417)
chr2 (558-610)||(40279416-40279468)
chr2 (422-478)||(43717117-43717173)
[»] scaffold0004 (1 HSPs)
scaffold0004 (428-471)||(98628-98671)
[»] chr4 (24 HSPs)
chr4 (422-472)||(28300286-28300336)
chr4 (422-471)||(23819122-23819171)
chr4 (431-480)||(37863933-37863982)
chr4 (422-478)||(38515866-38515920)
chr4 (436-480)||(1137759-1137803)
chr4 (428-472)||(1965980-1966024)
chr4 (428-472)||(17223023-17223067)
chr4 (428-480)||(39178245-39178297)
chr4 (422-481)||(49939928-49939988)
chr4 (525-600)||(35571650-35571725)
chr4 (427-470)||(56249562-56249605)
chr4 (426-472)||(7368041-7368087)
chr4 (428-478)||(20936210-20936260)
chr4 (430-480)||(23459669-23459719)
chr4 (430-480)||(39886632-39886682)
chr4 (427-472)||(2996611-2996656)
chr4 (427-480)||(25571298-25571351)
chr4 (428-469)||(29263409-29263450)
chr4 (534-594)||(16200006-16200066)
chr4 (423-463)||(19250580-19250620)
chr4 (436-480)||(19304973-19305017)
chr4 (428-480)||(29388823-29388875)
chr4 (438-482)||(42641616-42641660)
chr4 (422-473)||(55414405-55414457)
[»] scaffold0608 (1 HSPs)
scaffold0608 (427-480)||(9616-9669)
[»] scaffold0221 (1 HSPs)
scaffold0221 (427-467)||(2804-2844)


Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 80 - 610
Target Start/End: Complemental strand, 17770993 - 17770463
Alignment:
Q  80 ctgtcagccgaaatcaaaaggttacaagctcaaaaagacaccatttatcattaattgtttcaactttctgttttaccacatcctttctttctgttatata 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  17770993 ctgtcagccgaaatcaaaaggttacaagctcaaaaagacaccatttatcattatttgtttcaactttctattttaccacatcctttctttcttttatata 17770894  T
Q  180 aatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttattaacccttcacttctctaacttttccttattgttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770893 aatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttattaacccttcacttctctaacttttccttattgttc 17770794  T
Q  280 acatcacattgttaacatttaaactatatattatcaccaaaattattcagggtttgacaagggactttggtggctttggtagctttggtatccttctcaa 379  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17770793 acatcacattgttaacattcaaactatatattatcaccaaaattattcagggtttgacaatggactttggtggctttggtagctttggtatccttctcaa 17770694  T
Q  380 agggtatatgggaaaattaagttaagtcagtatcttcgatgattataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttc 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17770693 agggtatatgggaaaattaagttaagtcagtatcttcgatgattataaaaataagttgaaagcaccttatgaacatgtcataagctgttttcacaagttc 17770594  T
Q  480 ttgtcaaaaaacagtctcacaaaacaattagttcttgtaaatatcaagttatgttgtttttgcataaactattagctattttcataacctatctttgatg 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770593 ttgtcaaaaaacagtctcacaaaacaattagttcttgtaaatatcaagttatgttgtttttgcataaactattagctattttcataacctatctttgatg 17770494  T
Q  580 acttatgaaaataagttgaaaatagtttatg 610  Q
    |||||||||||||||||||||||||||||||    
T  17770493 acttatgaaaataagttgaaaatagtttatg 17770463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 328 - 610
Target Start/End: Original strand, 1575690 - 1575956
Alignment:
Q  328 agggtttgacaagggactttggtggctttggtagctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagtatcttcgatgattataa 427  Q
    |||||||| || |||||||||||||||| |||||||||| |||||||||||||| | | |||||||||| |||||||| |||||||||| |||||||| |    
T  1575690 agggtttggcaggggactttggtggcttaggtagctttg-tatccttctcaaagagcaaatgggaaaatcaagttaagccagtatcttcaatgattatga 1575788  T
Q  428 aaataagttgaaaacaccttatgaacatg-tcataagctgttttcacaagttcttgtcaaaaaacagtctcacaaaacaattagttcttgtaaatatcaa 526  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||             |||||||||||||||||  ||  ||||||||    
T  1575789 aaataagttgaaaacaccttatggacatgttcataagctgttttcataagttcttg-------------tcacaaaacaattagttagtgccaatatcaa 1575875  T
Q  527 gttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||   ||| ||||||||||||||| |||| || |||||    
T  1575876 gttatattgtatttgcataacctattagctattttcataacctatctt---tgaattatgaaaataagttaaaaacagcttatg 1575956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 390 - 610
Target Start/End: Original strand, 696442 - 696663
Alignment:
Q  390 ggaaaattaagttaagtcagtatcttcgatga-ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaa 488  Q
    |||||| |||||||| |||  ||||||||||| |||  |  ||||| | |||||| |||||||||||||||||||||||||||| ||||| ||| ||||     
T  696442 ggaaaactaagttaaatcaagatcttcgatgacttaagaggataagctaaaaacagcttatgaacatgtcataagctgttttcataagtttttgccaaac 696541  T
Q  489 aacagtctcacaaaacaattagttcttgtaaatatcaagttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaa 588  Q
    |||||||| ||||||| |||||||||||  || |||||||||| ||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||     
T  696542 aacagtcttacaaaactattagttcttgccaaaatcaagttatattgcttttgcataaactattagctattttaatagcctatcttcgatgacttatgag 696641  T
Q  589 aataagttgaaaatagtttatg 610  Q
    |||||| |||||| || |||||    
T  696642 aataagctgaaaacagcttatg 696663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 410 - 501
Target Start/End: Original strand, 696622 - 696714
Alignment:
Q  410 tatcttcgatga-ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    |||||||||||| |||| | |||||| |||||||| |||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||    
T  696622 tatcttcgatgacttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttcttgccaaataacagtctcacaa 696714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 501
Target Start/End: Original strand, 1575927 - 1576007
Alignment:
Q  421 attataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    ||||| |||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||| |||| |||| ||||||||    
T  1575927 attatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttcttgccaaacaacattctcacaa 1576007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 31624122 - 31624182
Alignment:
Q  421 attataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  31624122 attatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttctt 31624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 23272088 - 23271999
Alignment:
Q  410 tatcttcgatgattataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    ||||||||||| |||| | |||||| |||||||| ||||||| |  ||||||||||||||| | ||||||||| |||| |||||||||||||    
T  23272088 tatcttcgatgcttatgagaataagctgaaaacagcttatgatc--gtcataagctgttttgataagttcttgccaaataacagtctcacaa 23271999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 610
Target Start/End: Complemental strand, 23272135 - 23272048
Alignment:
Q  522 atcaagttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    |||||||||| |||  |||||||||||||||||||||||| ||| |||||||| |||| ||||||| |||||| |||||| || |||||    
T  23272135 atcaagttatattgcctttgcataaactattagctattttaatagcctatcttcgatg-cttatgagaataagctgaaaacagcttatg 23272048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 769180 - 769228
Alignment:
Q  431 taagttgaaaacaccttatgaacatgtcataagctgttttcacaagttc 479  Q
    ||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  769180 taagttgaaaacagcttatgaacatgtcataagatgttttcataagttc 769228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 465
Target Start/End: Original strand, 6647420 - 6647463
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagct 465  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  6647420 ttatgaaaataagttgaaaacatcttatgaacatgtcataagct 6647463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 471
Target Start/End: Original strand, 34403894 - 34403937
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttc 471  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  34403894 aaataaggtgaaaacaccttatgaacatgtcataagttgttttc 34403937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 10616750 - 10616692
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||  |||||||| ||||||||||||||||||| |||||| | |||||||    
T  10616750 ttataaaaataaactgaaaacagcttatgaacatgtcataaggtgttttgataagttct 10616692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 20368217 - 20368159
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| ||||||||||||||  | ||||||||||||||||||| |||||||| |||||||    
T  20368217 ttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttct 20368159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 3738108 - 3738161
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    ||||||||||||| || |||||| |||||||||||||||||| |||||| ||||    
T  3738108 aaataagttgaaagcagcttatggacatgtcataagctgtttccacaagatctt 3738161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 4080955 - 4080999
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||||||||||| |||||||||||| |||||| ||||||||    
T  4080955 aaataagttgaaaacaacttatgaacatggcataagttgttttca 4080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 5566208 - 5566164
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||    
T  5566208 aaataagttgaaaacaacttatggacatgtaataagctgttttca 5566164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 33887869 - 33887913
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||    
T  33887869 aaataagttgaaaacaacttgtgaacatgtcataagctattttca 33887913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 481
Target Start/End: Complemental strand, 26709828 - 26709793
Alignment:
Q  446 ttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||| |||||||||||||||||||||||||||||||    
T  26709828 ttataaacatgtcataagctgttttcacaagttctt 26709793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 2263225 - 2263283
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||| ||| |||||||||||||  ||||||||||||||| | |||||||| |||||||    
T  2263225 ttatagaaagaagttgaaaacacgctatgaacatgtcatatgttgttttcataagttct 2263283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 610
Target Start/End: Original strand, 2455817 - 2455871
Alignment:
Q  556 tattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    ||||||||||| ||||||| ||   |||||| |||||||||||||||||||||||    
T  2455817 tattttcataagctatcttggagagcttatggaaataagttgaaaatagtttatg 2455871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 469
Target Start/End: Original strand, 4246444 - 4246490
Alignment:
Q  423 tataaaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||||||||||||||||| |||||| ||||||||| || |||||    
T  4246444 tataaaaataagttgaaaacagcttatggacatgtcatgagttgttt 4246490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 8331699 - 8331757
Alignment:
Q  353 ctttggtagctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagta 411  Q
    |||||||||||||||||||||| ||| |||| | ||||| |||| ||||||| ||||||    
T  8331699 ctttggtagctttggtatccttgtcagagggcaaatgggtaaatcaagttaaatcagta 8331757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 28641786 - 28641736
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| | |||||| ||||||||||||| ||||||||||||||    
T  28641786 ttatgaaaataagctaaaaacagcttatgaacatgttataagctgttttca 28641736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Complemental strand, 7931757 - 7931704
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    ||||||| |||||||| |||| |||||||||||||| |||||||| ||| ||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctctt 7931704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Complemental strand, 8035180 - 8035127
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||||||||||  |||||| ||||||||||| |||||||  |||||||    
T  8035180 aaaataagttgaaaacaagttatgaccatgtcataagttgttttcttaagttct 8035127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 9668016 - 9667975
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  9668016 aaataagttgaaaacagcttatggacatgtcataagttgttt 9667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Complemental strand, 33832305 - 33832252
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| | |||||| ||||| ||||||||||||| |||||||| |||||||    
T  33832305 aaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttct 33832252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 2027437 - 2027393
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| |||||||| |||||| | |||||||||||||||||||    
T  2027437 aaataagctgaaaacagcttatggaaatgtcataagctgttttca 2027393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 22743520 - 22743564
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||||||    
T  22743520 aaataagctgaaaacagcttatgaacatgtaataagttgttttca 22743564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 7e-60; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 328 - 610
Target Start/End: Complemental strand, 15740686 - 15740420
Alignment:
Q  328 agggtttgacaagggactttggtggctttggtagctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagtatcttcgatgattataa 427  Q
    |||||||| || |||||||||||||||| |||||||||| |||||||||||||| | | |||||||||| |||||||| |||||||||| |||||||| |    
T  15740686 agggtttggcaggggactttggtggcttaggtagctttg-tatccttctcaaagagcaaatgggaaaatcaagttaagccagtatcttcaatgattatga 15740588  T
Q  428 aaataagttgaaaacaccttatgaacatg-tcataagctgttttcacaagttcttgtcaaaaaacagtctcacaaaacaattagttcttgtaaatatcaa 526  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||             |||||||||||||||||  ||  ||||||||    
T  15740587 aaataagttgaaaacaccttatggacatgttcataagctgttttcataagttcttg-------------tcacaaaacaattagttagtgccaatatcaa 15740501  T
Q  527 gttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||   ||| ||||||||||||||| |||| || |||||    
T  15740500 gttatattgtatttgcataacctattagctattttcataacctatctt---tgaattatgaaaataagttaaaaacagcttatg 15740420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 390 - 610
Target Start/End: Complemental strand, 43219874 - 43219653
Alignment:
Q  390 ggaaaattaagttaagtcagtatcttcgatga-ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaa 488  Q
    |||||| |||||||| |||  ||||||||||| |||  |  ||||| | |||||| |||||||||||||||||||||||||||| ||||| ||| ||||     
T  43219874 ggaaaactaagttaaatcaagatcttcgatgacttaagaggataagctaaaaacagcttatgaacatgtcataagctgttttcataagtttttgccaaac 43219775  T
Q  489 aacagtctcacaaaacaattagttcttgtaaatatcaagttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaa 588  Q
    |||||||| ||||||| |||||||||||  || |||||||||| ||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||     
T  43219774 aacagtcttacaaaactattagttcttgccaaaatcaagttatattgcttttgcataaactattagctattttaatagcctatcttcgatgacttatgag 43219675  T
Q  589 aataagttgaaaatagtttatg 610  Q
    |||||| |||||| || |||||    
T  43219674 aataagctgaaaacagcttatg 43219653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 438 - 610
Target Start/End: Original strand, 11047916 - 11048088
Alignment:
Q  438 aaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaaaacaattagttcttgtaaatatcaagttatgttgtt 537  Q
    |||||| ||||||||||||||||||| |||||| | ||||| ||| |||| |||||||| ||||||| |||||||||||  || |||||||||| ||| |    
T  11047916 aaaacagcttatgaacatgtcataagttgtttttataagtttttgccaaacaacagtcttacaaaactattagttcttgccaaaatcaagttatattgct 11048015  T
Q  538 tttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    |||||||||||||||||||||||| |||  ||||||| |||||||||||| |||||| |||||| || |||||    
T  11048016 tttgcataaactattagctattttaataggctatcttcgatgacttatgagaataagctgaaaacagcttatg 11048088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 43219694 - 43219602
Alignment:
Q  410 tatcttcgatga-ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    |||||||||||| |||| | |||||| |||||||| |||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||    
T  43219694 tatcttcgatgacttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttcttgccaaataacagtctcacaa 43219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 410 - 501
Target Start/End: Original strand, 11048047 - 11048139
Alignment:
Q  410 tatcttcgatga-ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    |||||||||||| |||| | |||||| |||||||| ||||||||||||||||||| |||||| | ||||||||| |||| |||||||||||||    
T  11048047 tatcttcgatgacttatgagaataagctgaaaacagcttatgaacatgtcataagttgttttgataagttcttgccaaataacagtctcacaa 11048139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 501
Target Start/End: Complemental strand, 15740449 - 15740369
Alignment:
Q  421 attataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    ||||| |||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||| |||| |||| ||||||||    
T  15740449 attatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttcttgccaaacaacattctcacaa 15740369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 19719039 - 19719097
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||| ||||| ||||||||  |||||||||||||||||| |||||||| |||||||    
T  19719039 ttataaagataagctgaaaacagtttatgaacatgtcataagttgttttcataagttct 19719097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 39967958 - 39968012
Alignment:
Q  427 aaaataagttgaaaacaccttatgaac-atgtcataagctgttttcacaagttct 480  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||    
T  39967958 aaaataagttgaaaacagcttatgaacaatgccataagctgttttcataagttct 39968012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 20888425 - 20888377
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaag 476  Q
    ||||||| |||||||| |||||||||||| |||||| ||||||||||||    
T  20888425 aaataagctgaaaacaacttatgaacatggcataagttgttttcacaag 20888377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 34035955 - 34036010
Alignment:
Q  427 aaaataagttgaaaacaccttatgaac-atgtcataagctgttttcacaagttctt 481  Q
    ||||||||||||||||| ||||||||| |||||||||| | |||||| ||||||||    
T  34035955 aaaataagttgaaaacaacttatgaacaatgtcataagttattttcataagttctt 34036010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 9038150 - 9038203
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| | ||||||||    
T  9038150 aaaataagctgaaaacaa-ttatgaacatgtcataagctgtttttataagttctt 9038203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 25511665 - 25511707
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    |||||||||||| |||  |||||||||||||||||||||||||    
T  25511665 aaataagttgaagacaatttatgaacatgtcataagctgtttt 25511707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 36598387 - 36598346
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||| |||||||| ||||||||||||||||||| |||||    
T  36598387 aaataagctgaaaacagcttatgaacatgtcataagatgttt 36598346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 43250722 - 43250681
Alignment:
Q  436 tgaaaacaccttatgaacatgtcataagctgttttcacaagt 477  Q
    |||||||| |||| ||||||||||||||||||||||| ||||    
T  43250722 tgaaaacaacttacgaacatgtcataagctgttttcataagt 43250681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 469
Target Start/End: Complemental strand, 6857369 - 6857329
Alignment:
Q  429 aataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||||||||||| |||||| ||||| ||||||||||||    
T  6857369 aataagttgaaaacaacttatggacatggcataagctgttt 6857329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 22551436 - 22551392
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| |||||||| | | ||||||||||||||||||||||||    
T  22551436 aaataagctgaaaacaacatttgaacatgtcataagctgttttca 22551392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 25596066 - 25596114
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    |||| ||||||||||||||||| ||||  ||| ||||||||||||||||    
T  25596066 ttatgaaaataagttgaaaacaacttagtaacttgtcataagctgtttt 25596114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 250 - 487
Target Start/End: Original strand, 5396075 - 5396295
Alignment:
Q  250 cttcacttctctaacttttccttattgttcacatcacattgttaacatttaaactatatattatcaccaaaattattcagggtttgacaagggactttgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |  ||||||||      
T  5396075 cttcacttctctaacttttccttattgttcacatcacattgttaacattcaaactatattttatcaccataattattcagggtttggccggggacttt-- 5396172  T
Q  350 tggctttggtagctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagtatcttcgatga-ttataaaaataagttgaaaacacctta 448  Q
                    |||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||| |||||||| |||||||||||||    
T  5396173 ----------------ggtatccttctcaaagggtaaatgggaaaatcaagttaaatcagtatcttcgatgacttatgaaaataagctgaaaacacctta 5396256  T
Q  449 tgaacatgtcataagctgttttcacaagttcttgtcaaa 487  Q
    | |||||||||||||||||||  | ||||||||| ||||    
T  5396257 ttaacatgtcataagctgtttcaataagttcttggcaaa 5396295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 438 - 610
Target Start/End: Complemental strand, 39723421 - 39723249
Alignment:
Q  438 aaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaaaacaattagttcttgtaaatatcaagttatgttgtt 537  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||| |||||||||||  || |||||||||| ||| |    
T  39723421 aaaacagcttatgaacatgtcataagctgttttcataagtttttgccaaacaacagtcttacaaaactattagttcttgccaaaatcaagttatattgct 39723322  T
Q  538 tttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |||||| || |||||    
T  39723321 tttgcataaactattagctattttaatagcctatcttcgatgacttatgagaataagctgaaaacagcttatg 39723249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 162 - 313
Target Start/End: Original strand, 5391726 - 5391869
Alignment:
Q  162 ctttctttctgttatataaatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttattaacccttcacttctct 261  Q
    |||||||||| ||||||||||||||||||||        |||||||||||||  ||||||||||||||||||||||||||| |||| |||||||||||||    
T  5391726 ctttctttcttttatataaatcacttttcct--------tctctcttaaatcaattcaccctctatcacaaccaatctcttcttaagccttcacttctct 5391817  T
Q  262 aacttttccttattgttcacatcacattgttaacatttaaactatatattat 313  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  5391818 aacttttctttattgttcacatcacattgttaacattcaaactatatgttat 5391869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 39723290 - 39723198
Alignment:
Q  410 tatcttcgatga-ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    |||||||||||| |||| | |||||| |||||||| |||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||    
T  39723290 tatcttcgatgacttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttcttgccaaataacagtctcacaa 39723198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 422 - 487
Target Start/End: Original strand, 5391912 - 5391977
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaa 487  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||    
T  5391912 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttattgccaaa 5391977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 53762426 - 53762381
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  53762426 aaaataagttgaaaacagcttatgaacatgtcataagctgttttca 53762381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 45541618 - 45541663
Alignment:
Q  436 tgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||    
T  45541618 tgaaaacagcttatgaacatgtcataagctgttttcataagttctt 45541663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 3044296 - 3044249
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  3044296 ttatgaaaataagttgaaaacagcttatgaacatgtcataagttgttt 3044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 481
Target Start/End: Original strand, 34954115 - 34954173
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||| |||||||| |||||||| || ||||||||||||| ||||||||||||||||||||    
T  34954115 ttatgaaaataagctgaaaacagctcatgaacatgtcat-agctgttttcacaagttctt 34954173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 39602247 - 39602188
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||| |||||||||||||||||  |||||||||||||||||||||| |||| ||| ||||    
T  39602247 ttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctctt 39602188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 54837071 - 54837012
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||||||||  |||||||  ||||||||||||||||||||||||||| || |||||    
T  54837071 ttataaaaataagcggaaaacaagttatgaacatgtcataagctgttttcataaattctt 54837012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 52440699 - 52440645
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaag 476  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||| || |||||||    
T  52440699 ttatgaaaattagttgaaaacaacttatgaacatgtcataagctattctcacaag 52440645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 463
Target Start/End: Original strand, 25925775 - 25925816
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataag 463  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  25925775 ttatgaaaataagttgaaaacagcttatgaacatgtcataag 25925816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 36101601 - 36101650
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttc 471  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||||||    
T  36101601 ttatgaaaataagctgaaaacagcttgtgaacatgtcataagctgttttc 36101650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 36139911 - 36139960
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttc 471  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||||||    
T  36139911 ttatgaaaataagctgaaaacagcttgtgaacatgtcataagctgttttc 36139960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 553 - 610
Target Start/End: Complemental strand, 39602276 - 39602219
Alignment:
Q  553 agctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||| | ||||||    
T  39602276 agctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatg 39602219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 29427676 - 29427624
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||||||| | |||||||||||||||| || |||||||| |||||||    
T  29427676 aaataagttgaaaatagcttatgaacatgtcattaggtgttttcataagttct 29427624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 470
Target Start/End: Original strand, 5166361 - 5166404
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||    
T  5166361 aaaataagatgaaaacagcttatgaacatgtcatatgctgtttt 5166404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 21367700 - 21367759
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaaca-tgtcataagctgttttcacaagttct 480  Q
    |||| |||||||| |||||||| ||| |||||| |||||||||||||||||| |||||||    
T  21367700 ttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttct 21367759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 2152215 - 2152165
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||| ||| |||||||||||| |||| |||||||||||||| ||||||||    
T  2152215 ttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttttca 2152165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 3015880 - 3015830
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| |||||||| |||||| |||||||||||| ||||||||    
T  3015880 ttattaaaataagatgaaaacatcttatggacatgtcataagttgttttca 3015830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 26878238 - 26878292
Alignment:
Q  427 aaaataagttgaaaacaccttatgaaca-tgtcataagctgttttcacaagttct 480  Q
    |||||||| ||||||||  ||||||||| ||||||||||| ||||||||||||||    
T  26878238 aaaataagctgaaaacagtttatgaacaatgtcataagctattttcacaagttct 26878292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 34707525 - 34707475
Alignment:
Q  430 ataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||||||| |||||| |||||||| ||| |||||||| |||||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttct 34707475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 460
Target Start/End: Original strand, 40665462 - 40665500
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcat 460  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  40665462 ttataaaaataagctgaaaacagcttatgaacatgtcat 40665500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 53952081 - 53952139
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| |||||||| |||||||| || |||||||||| || ||||||||||| |||||||    
T  53952081 ttatgaaaataagctgaaaacagctcatgaacatgttatcagctgttttcataagttct 53952139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 54180817 - 54180759
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||| ||||||| | |||||| |||||| ||||||||||||||||||  |||||||||    
T  54180817 ttatataaataagctaaaaacaacttatggacatgtcataagctgtttctacaagttct 54180759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 13804815 - 13804856
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgtt 468  Q
    ||||||||||||||||| |||||| |||||||||||| ||||    
T  13804815 aaaataagttgaaaacagcttatggacatgtcataagttgtt 13804856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 20192637 - 20192596
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||| ||||||||||| |||||| ||||||||||||||||||    
T  20192637 aaatgagttgaaaacagcttatggacatgtcataagctgttt 20192596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 21754755 - 21754800
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||||||| || |||||||||||||||| ||||||||    
T  21754755 aaaacaagttgaaaacaactgatgaacatgtcataagttgttttca 21754800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 23816254 - 23816311
Alignment:
Q  425 taaaaataagttgaaaacaccttatgaac-atgtcataagctgttttcacaagttctt 481  Q
    ||||||||||||||||||| ||||||||| ||| ||||| |||||||  |||||||||    
T  23816254 taaaaataagttgaaaacagcttatgaacaatgccataacctgttttttcaagttctt 23816311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Complemental strand, 27290932 - 27290879
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    ||||||| |||||||| ||||||  |||||||||||||||||||| ||| ||||    
T  27290932 aaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctctt 27290879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 610
Target Start/End: Complemental strand, 28622093 - 28622008
Alignment:
Q  525 aagttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    |||||| ||||||||||  ||| |||| |||| ||||||||| ||||||| ||  ||||||||||||||  |||||| || |||||    
T  28622093 aagttaagttgtttttgtgtaagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatg 28622008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 37273173 - 37273214
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  37273173 aaataagttgaaaacaacttatggacatgtcataagttgttt 37273214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 42745077 - 42745118
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||| |||||||| ||||||||||||||||||| |||||    
T  42745077 aaataagatgaaaacaacttatgaacatgtcataagttgttt 42745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 23808101 - 23808045
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    |||| |||||||| ||||||||  || |||||||||||||||||| ||||| |||||    
T  23808101 ttatgaaaataagatgaaaacaatttgtgaacatgtcataagctgctttcataagtt 23808045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 24624250 - 24624302
Alignment:
Q  429 aataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||| ||||||||  ||||| ||||||||||||||||||||| ||| ||||    
T  24624250 aataagctgaaaacagtttatggacatgtcataagctgttttcataagctctt 24624302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 34924612 - 34924556
Alignment:
Q  545 aaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaa 601  Q
    ||||||| |||||||||||||| ||||||| ||   |||||||||||||| ||||||    
T  34924612 aaactatgagctattttcataagctatcttagagagcttatgaaaataagctgaaaa 34924556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 36770005 - 36769950
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||| |||||||   || |||||||||||| ||||||||||| |||||||    
T  36770005 ttataaaaataagatgaaaac---ttgtgaacatgtcatgagctgttttcataagttct 36769950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 38971297 - 38971341
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||||||||||| |||| |||||||| |||| |||||||||    
T  38971297 aaataagttgaaaacagcttacgaacatgttataaactgttttca 38971341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 49465696 - 49465644
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||| | |||| |||| |||||||||| |||||||||||||| |||||||    
T  49465696 aaataagcttaaaaaacctaatgaacatgtaataagctgttttcataagttct 49465644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 41066821 - 41066752
Alignment:
Q  127 tcattaattgtttcaactttctgttttaccacatcctttctttctgttatataaatcacttttcctcact 196  Q
    |||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  41066821 tcattaattgtcccaactttctgttttacaacatcctttctttcttttatataaatcacttttcctcact 41066752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 41066729 - 41066667
Alignment:
Q  202 ctctcttaaatctcttcaccctctatcacaaccaatc---tcttattaacccttcacttctct 261  Q
    |||||||||||||||||||||||||||||| ||||||   ||||| |||||||||||||||||    
T  41066729 ctctcttaaatctcttcaccctctatcacagccaatctcttcttaataacccttcacttctct 41066667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 3254259 - 3254317
Alignment:
Q  423 tataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||||  ||||||||    
T  3254259 tatagaaataagctgaaaacagcttatgaacatgtcataagctgttttcttaagttctt 3254317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 779093 - 779039
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||  ||||||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctt 779039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 1930073 - 1930127
Alignment:
Q  427 aaaataagttgaaaacaccttatgaaca-tgtcataagctgttttcacaagttct 480  Q
    |||||||| |||||||| |||||||||| |||||||| |||||||||||||||||    
T  1930073 aaaataagctgaaaacagcttatgaacaatgtcataaactgttttcacaagttct 1930127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 8629489 - 8629547
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||| | |||||||||||| ||||||| ||||||||||| |||||||| |||||||    
T  8629489 ttataaatagaagttgaaaacaacttatgatcatgtcataagttgttttcataagttct 8629547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 9835931 - 9835890
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||| |||||||| |||||||||||||||||||||||||    
T  9835931 aaataagatgaaaacagcttatgaacatgtcataagctgttt 9835890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 3161660 - 3161604
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    ||||||||||||| ||||||||  |||||||||||||||||| | |||||| |||||    
T  3161660 ttataaaaataagctgaaaacattttatgaacatgtcataagttattttcataagtt 3161604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 12851209 - 12851265
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    |||| ||||||||  ||||||| ||||||||||||| |||||||||||||| |||||    
T  12851209 ttatgaaaataagccgaaaacatcttatgaacatgttataagctgttttcataagtt 12851265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 42215337 - 42215293
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| |||||||| |||||||||| |||||||||||||||||    
T  42215337 aaataagctgaaaacagcttatgaacaagtcataagctgttttca 42215293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 10383924 - 10383975
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttc 479  Q
    ||||||| || ||||| |||||||| ||||||||||||||||||| ||||||    
T  10383924 aaataagctgtaaacagcttatgaaaatgtcataagctgttttcataagttc 10383975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 11771048 - 11770989
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||||||||||||||||| | |||  |||| ||||||| |||||||| ||||||||    
T  11771048 ttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 11770989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 471
Target Start/End: Complemental strand, 41606934 - 41606891
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttc 471  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||    
T  41606934 aaataagctgaaaacaacttttgaacatgtcataagctgttttc 41606891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 469
Target Start/End: Complemental strand, 11569489 - 11569447
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||||||| |||||||| |||||| ||||||||||||||||||    
T  11569489 aaaataagctgaaaacaacttatgtacatgtcataagctgttt 11569447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 13459678 - 13459736
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| |||||| | ||||||||  ||||||| ||||||||||||||||||| |||||||    
T  13459678 ttatgaaaataggctgaaaacagtttatgaaaatgtcataagctgttttcataagttct 13459736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 464
Target Start/End: Original strand, 20672783 - 20672825
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagc 464  Q
    |||| |||||||| |||||||| ||||||||||||||||||||    
T  20672783 ttatgaaaataagctgaaaacagcttatgaacatgtcataagc 20672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 30389132 - 30389182
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| |||||||| |||||||||||||||| |||| ||||||    
T  30389132 ttatgaaaataagctgaaaacaacttatgaacatgtcattagctattttca 30389182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 2595027 - 2594986
Alignment:
Q  429 aataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    |||||| |||||||| ||||||||||||||||||| ||||||    
T  2595027 aataagctgaaaacaacttatgaacatgtcataagttgtttt 2594986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 11119034 - 11118993
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataag 463  Q
    ||||||||||| | |||||||| |||||||||||||||||||    
T  11119034 ttataaaaatatgctgaaaacagcttatgaacatgtcataag 11118993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 11185260 - 11185301
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||||||||||||||| ||||||||||||| ||||| |||||    
T  11185260 aaataagttgaaaacaacttatgaacatgttataagatgttt 11185301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 12361231 - 12361268
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagct 465  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  12361231 aaataagttgaaaacagcttatggacatgtcataagct 12361268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 43368732 - 43368687
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||||||||| | || |||||||||||||||| ||||||||    
T  43368732 aaaataagttgaaaatagctaatgaacatgtcataagttgttttca 43368687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 2458589 - 2458545
Alignment:
Q  436 tgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| |||||||||||| |||||||||| |||| |||||||    
T  2458589 tgaaaacagcttatgaacatgccataagctgtcttcataagttct 2458545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 3600775 - 3600735
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataa 462  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  3600775 ttatgaaaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 6525657 - 6525625
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaaca 454  Q
    |||||||||||||||||||||| ||||||||||    
T  6525657 ttataaaaataagttgaaaacagcttatgaaca 6525625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 7918477 - 7918433
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||||| ||||| |||||||||||||| |||| ||||||||    
T  7918477 aaataagttggaaacagcttatgaacatgtcttaagttgttttca 7918433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 14339642 - 14339602
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataa 462  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  14339642 ttatgaaaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 14949897 - 14949949
Alignment:
Q  420 gattataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| ||||||| |||||||| |||||| |||||||||||| | ||||||    
T  14949897 gattatagaaataagctgaaaacagcttatggacatgtcataagttattttca 14949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 10744334 - 10744392
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  10744334 ttataaaaataagatgaaaacagcttatgaacatgccataagctgttttcacaagttct 10744392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 35925729 - 35925780
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttc 479  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  35925729 aaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttc 35925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 37811891 - 37811943
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  37811891 aaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttct 37811943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 4549883 - 4549939
Alignment:
Q  424 ataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| |||||| |||||||| |||||||||||||||||| ||||||||| |||||||    
T  4549883 ataagaataagctgaaaacaacttatgaacatgtcataatctgttttcagaagttct 4549939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 6292526 - 6292574
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  6292526 ttatgaaaataagctgaaaacagcttatgaacatgtcataagctgtttt 6292574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 610
Target Start/End: Original strand, 2294882 - 2294972
Alignment:
Q  520 atatcaagttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    |||| ||||||  ||||||||| |||| |||| |||||||||||||| ||||||| ||  ||||| ||||||||| |||||| || |||||    
T  2294882 atataaagttaaattgtttttggataagctataagctattttcataaactatcttggagaacttacgaaaataaggtgaaaacagcttatg 2294972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 10199445 - 10199395
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| |||||||| ||||||||||||||||||||| ||||||    
T  10199445 ttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttca 10199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 37842392 - 37842334
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||| |||||||  |||||||||||||||| || |||||||| |||||||    
T  37842392 ttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataagttct 37842334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 38170722 - 38170677
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||    
T  38170722 aaaacaagctgaaaacaacttatgaacatgtcataagctgttttca 38170677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 501
Target Start/End: Original strand, 6262059 - 6262128
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaa 501  Q
    |||||||||||||| | ||||||||||||||||||| |||| ||| ||| ||||||    ||||||||||||||    
T  6262059 aaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctcttgt----aaacagtctcacaa 6262128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 10854771 - 10854815
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttc 471  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||    
T  10854771 aaaataagctgaaaacagcttgtgaacatgtcataagctgttttc 10854815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 38001643 - 38001687
Alignment:
Q  436 tgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||    
T  38001643 tgaaaacaacttatgaacaggtcataagctgttttcataagttct 38001687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 4699652 - 4699597
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagt 477  Q
    ||||| ||||||| | |||||| ||||||||||||||||||| |||||||| ||||    
T  4699652 ttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataagt 4699597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 603
Target Start/End: Complemental strand, 7137081 - 7137014
Alignment:
Q  536 tttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaata 603  Q
    |||||| |||| |||| |||| ||||||||| ||||||| ||  ||||||||||||||| ||||||||    
T  7137081 tttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaata 7137014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 11639453 - 11639394
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||| |||||||| | |||||| |||||| ||||||||||||||||||||| ||| ||||    
T  11639453 ttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctctt 11639394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 469
Target Start/End: Original strand, 11695894 - 11695941
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||| ||||||||||||||||| |||||| ||||||||||| ||||||    
T  11695894 ttatgaaaataagttgaaaacagcttatggacatgtcataaactgttt 11695941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 28689489 - 28689442
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||| |||||||| |||||||| |||||| ||||||||||||||||||    
T  28689489 ttatgaaaataagctgaaaacaacttatggacatgtcataagctgttt 28689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 30815690 - 30815643
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||||||    
T  30815690 ttatgaaaataagctgaaaacattttatgaacatgtcataagctgttt 30815643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 463
Target Start/End: Original strand, 47917275 - 47917310
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataag 463  Q
    |||||||||||||||| |||||||||||||||||||    
T  47917275 aaataagttgaaaacaacttatgaacatgtcataag 47917310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 1565567 - 1565513
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||| |||||||| |||||| |||||||||||||||| |||  ||||||||    
T  1565567 aaaataagctgaaaacagcttatgcacatgtcataagctgtcttcctaagttctt 1565513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 7218111 - 7218057
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaag 476  Q
    |||| ||||||||||||||||| ||| ||||| |||||||||  |||||||||||    
T  7218111 ttatgaaaataagttgaaaacagcttgtgaacgtgtcataagtcgttttcacaag 7218057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 7262549 - 7262507
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||    
T  7262549 aaataaggtgaaaacagcttatgaacatgtcaaaagctgtttt 7262507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 24460440 - 24460394
Alignment:
Q  426 aaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||| || ||||| ||||||||||||||||||||| ||||||    
T  24460440 aaaaataagctggaaacagcttatgaacatgtcataagctattttca 24460394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 31118082 - 31118132
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    ||||||| |||||||| || |||||||||||||||| |||||||| |||||    
T  31118082 aaataagctgaaaacaactgatgaacatgtcataagatgttttcataagtt 31118132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 31517777 - 31517719
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| |||||||| |||||||| |||||||||||||||| || |||||| | |||||||    
T  31517777 ttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttct 31517719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 37593721 - 37593671
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| |||||||| ||||||||||||||||||| ||| ||||    
T  37593721 ttatgaaaataagctgaaaacagcttatgaacatgtcataagttgtgttca 37593671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 38247090 - 38247032
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| ||||||||||||| ||||||||| ||| |||||  ||||||| |||||||    
T  38247090 ttataaaagtaagttgaaaacaacttatgaacgtgtaataagtggttttcataagttct 38247032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 4445746 - 4445791
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||||||||||| ||| ||||||||| |||||||| |||||    
T  4445746 aaaataagttgaaaacagcttctgaacatgttataagctgctttca 4445791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 4481968 - 4482021
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| | |||||| ||||||||||||| ||||| |||||||| |||||||    
T  4481968 aaaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttct 4482021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 4549714 - 4549747
Alignment:
Q  436 tgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||||||| |||||||||||||||||||||||||    
T  4549714 tgaaaacagcttatgaacatgtcataagctgttt 4549747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 5887026 - 5886989
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagc 464  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  5887026 aaaataagctgaaaacaacttatgaacatgtcataagc 5886989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 27140517 - 27140558
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||| |||||||| |||||| ||||||||||||||||||    
T  27140517 aaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 29723528 - 29723569
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  29723528 aaataagttgaaaacagtttatggacatgtcataagctgttt 29723569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 39270457 - 39270412
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||||||||||| |||||| ||||| || ||||||||||||    
T  39270457 aaaataagttgaaaacagcttatggacatgccaaaagctgttttca 39270412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 45394154 - 45394207
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||||||||||| |||||  |||| |||||||||||||||  ||||||||    
T  45394154 aaataagttgaaaacagcttatcgacatctcataagctgttttcttaagttctt 45394207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 463
Target Start/End: Original strand, 5276331 - 5276367
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataag 463  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  5276331 aaaataacttgaaaacaacttatgaacatgtcataag 5276367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 12477318 - 12477274
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| |||||||| |||||| ||||||||||||||| |||||    
T  12477318 aaataagctgaaaacaacttatggacatgtcataagctgctttca 12477274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 30257716 - 30257756
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataa 462  Q
    ||||| ||||||| |||||||| ||||||||||||||||||    
T  30257716 ttatagaaataagctgaaaacagcttatgaacatgtcataa 30257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 34290269 - 34290317
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    |||| |||||||| |||||||| |||||||| |||||||||||| ||||    
T  34290269 ttatgaaaataagctgaaaacaacttatgaatatgtcataagctttttt 34290317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 35669011 - 35669063
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||||||  ||||| |||| |||||||||| ||||| |||||||    
T  35669011 aaataagttgaaaacaatttatggacatatcataagctgctttcataagttct 35669063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 38882949 - 38882917
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaaca 454  Q
    |||| ||||||||||||||||||||||||||||    
T  38882949 ttatgaaaataagttgaaaacaccttatgaaca 38882917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 573
Target Start/End: Original strand, 41059904 - 41059955
Alignment:
Q  522 atcaagttatgttgtttttgcataaactattagctattttcataacctatct 573  Q
    |||||||||| || |||||||||||||||||||||||||||||| |||||||    
T  41059904 atcaagttatattttttttgcataaactattagctattttcatagcctatct 41059955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 470
Target Start/End: Complemental strand, 15406044 - 15406001
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||    
T  15406044 aaaataaattgaaaacagcttatgaacatgtcataagctgtttt 15406001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 42100344 - 42100403
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaac-atgtcataagctgttttcacaagttct 480  Q
    |||| |||||||| |||||||||||| ||||| |||||||||||| ||||||||||||||    
T  42100344 ttatgaaaataagatgaaaacaccttttgaactatgtcataagctattttcacaagttct 42100403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 7674686 - 7674740
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||| |||||||||||||| ||||||||||||| ||||| || ||||||||    
T  7674686 aaaataagctgaaaacaccttataaacatgtcataagttgtttccataagttctt 7674740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 10125755 - 10125697
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| |||||||| |||||||||||||| ||||||||||||| ||||| || |||||||    
T  10125755 ttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttct 10125697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 13604886 - 13604836
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| ||||||||||||||||| | |||| |||||||||||||||||||||    
T  13604886 ttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttca 13604836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 17258920 - 17258870
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| |||||||| ||||||||||||||||||||| ||||||    
T  17258920 ttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttca 17258870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 21768229 - 21768184
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||    
T  21768229 aaaataagttgaaaacagcgtatggacatgtcataagctgttttca 21768184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 499762 - 499710
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||| |||||||| ||| | |||||||||||||||||||||| |||||||    
T  499762 aaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttct 499710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 610
Target Start/End: Original strand, 11064442 - 11064493
Alignment:
Q  559 tttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    |||||||| |||||||||||||||||||| ||||||  |||||||| |||||    
T  11064442 tttcataagctatctttgatgacttatgagaataagcagaaaatagcttatg 11064493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 18857435 - 18857376
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||| ||| |||||| |||||| |||||||||||||||| ||||||||||| || |||||    
T  18857435 ttatgaaattaagttaaaaacagcttatgaacatgtcattagctgttttcataaattctt 18857376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 480
Target Start/End: Original strand, 39248143 - 39248190
Alignment:
Q  433 agttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||| |||||||||| ||||||||||||||| | |||||||    
T  39248143 agttgaaaacagcttatgaacaagtcataagctgtttttataagttct 39248190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 41957488 - 41957441
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||| |||||||| |||||||| |||||| ||||||||||||||||||    
T  41957488 ttatgaaaataagatgaaaacaacttatggacatgtcataagctgttt 41957441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 1899193 - 1899235
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    ||||||| |||||||| |||||| |||||||||||||||||||    
T  1899193 aaataagctgaaaacaacttatgcacatgtcataagctgtttt 1899235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 2568696 - 2568750
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||| | |||| | |||||||| ||||||||||||||||||| ||||||||    
T  2568696 aaaataagctaaaaataacttatgaatatgtcataagctgttttcataagttctt 2568750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 610
Target Start/End: Original strand, 7984952 - 7985030
Alignment:
Q  533 ttgtttttgcataaa-ctattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    ||||||||||||||| |||| |||| ||||||||| ||||||| ||  | ||||||||||||| |||||| || |||||    
T  7984952 ttgtttttgcataaagctataagcttttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 7985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 22020357 - 22020399
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||||||||||||| |||||  ||||||||||||||||||    
T  22020357 aaaataagttgaaaacaacttattgacatgtcataagctgttt 22020399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 2880578 - 2880537
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||| |||||||||||||||||||| |||| ||||||||    
T  2880578 aaataagctgaaaacaccttatgaacatatcattagctgttt 2880537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 3977340 - 3977397
Alignment:
Q  421 attataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    ||||| |||||||| |||| ||| || | ||||||||||||||||||||||| |||||    
T  3977340 attatgaaaataagctgaagacagctaaggaacatgtcataagctgttttcataagtt 3977397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 601
Target Start/End: Original strand, 12425555 - 12425623
Alignment:
Q  533 ttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaa 601  Q
    ||||||| | |||| |||| |||| |||||| || ||||||| ||  ||||||||||||||||||||||    
T  12425555 ttgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaa 12425623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 14331400 - 14331448
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    |||| |||||||| ||||| || |||||| |||||||||||||||||||    
T  14331400 ttatgaaaataagctgaaatcagcttatggacatgtcataagctgtttt 14331448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 17368715 - 17368767
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||| |||||||  | ||||||||||||||||| |||||||| |||||||    
T  17368715 aaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttct 17368767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 25461402 - 25461334
Alignment:
Q  533 ttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaa 601  Q
    |||||||||||||| |||| | || ||||||||||||||||| |   | ||||||||||||| ||||||    
T  25461402 ttgtttttgcataagctataaactgttttcataacctatcttggcgtatttatgaaaataagctgaaaa 25461334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 37794729 - 37794685
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||||    
T  37794729 aaataagctcaaaacagcttatgaacatgtcataagttgttttca 37794685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 481
Target Start/End: Original strand, 42646947 - 42646983
Alignment:
Q  445 cttatgaacatgtcataagctgttttcacaagttctt 481  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  42646947 cttatgaacatgtcataagctattttcataagttctt 42646983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 5902585 - 5902527
Alignment:
Q  423 tataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||||||| ||| ||||||||  ||||||||||||||||||||||||||| ||||||||    
T  5902585 tataaaaacaagctgaaaacagtttatgaacatgtcataagctgttttcataagttctt 5902527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 1647275 - 1647328
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||    
T  1647275 aaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttctt 1647328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 40682432 - 40682373
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaac-atgtcataagctgttttcacaagttct 480  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||    
T  40682432 ttatgaaaataagttgaaaacaacttatgaacaatgtcataagctattttaacaagttct 40682373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 44438870 - 44438819
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttc 479  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||| ||||    
T  44438870 aaataagctgaaaacaggttatgaacatgtcataagctgttttcacatgttc 44438819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 787373 - 787423
Alignment:
Q  430 ataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||| |||||||| |||||| ||||||||||||||||||||| |||||||    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataagttct 787423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 35538728 - 35538674
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaag 476  Q
    ||||| |||||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  35538728 ttatataaataagcggaaaacagcttatgaacatgtcataagctattttcacaag 35538674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 35557162 - 35557108
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaag 476  Q
    ||||| |||||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  35557162 ttatataaataagcagaaaacagcttatgaacatgtcataagctattttcacaag 35557108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 28677690 - 28677638
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||  ||||||| |||||||| ||||||||||||||||||| |||||||    
T  28677690 aaataagccgaaaacaacttatgaaaatgtcataagctgttttcataagttct 28677638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 40158760 - 40158808
Alignment:
Q  431 taagttgaaaacaccttatgaacatgtcataagctgttttcacaagttc 479  Q
    |||| |||||||| ||||| |||||||||||||||||||||| ||||||    
T  40158760 taagctgaaaacaacttataaacatgtcataagctgttttcataagttc 40158808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 43530142 - 43530090
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||||||| | ||| |||||||||||||| ||||||||| |||||||    
T  43530142 aaataagttgaaaatagcttgtgaacatgtcataatctgttttcataagttct 43530090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 480
Target Start/End: Original strand, 1801724 - 1801759
Alignment:
Q  445 cttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||||||||||||||||||||| |||||||    
T  1801724 cttatgaacatgtcataagctgttttcataagttct 1801759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 44606147 - 44606088
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    |||| ||||| || |||||||| |||||| |||||||||||| |||||||| ||||||||    
T  44606147 ttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataagttctt 44606088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 480
Target Start/End: Original strand, 4350747 - 4350781
Alignment:
Q  446 ttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||||||||||||||||| |||||||    
T  4350747 ttatgaacatgtcataagctgttttcataagttct 4350781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 504
Target Start/End: Complemental strand, 7035604 - 7035525
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaac-atgtcataagctgttttcacaagttcttgtcaaaaaacagtctcacaaaac 504  Q
    |||| ||||||||  |||||||||||||||||  ||||||||||||||| || ||||||||     ||||||||||||||||||    
T  7035604 ttatgaaaataagcggaaaacaccttatgaactgtgtcataagctgtttccataagttctt----caaaacagtctcacaaaac 7035525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 12313210 - 12313160
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| ||||| || |||||||||||| |||||||||||||||    
T  12313210 ttatgaaaataaggtgaaatcaacttatgaacatggcataagctgttttca 12313160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 29316806 - 29316764
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    ||||||| |||||| | ||||||||||||||||||||||||||    
T  29316806 aaataagctgaaaagaacttatgaacatgtcataagctgtttt 29316764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 35378569 - 35378511
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| |||||||| |||||| | |||||||||| ||||| ||||||||||| |||||||    
T  35378569 ttatgaaaataagctgaaaataacttatgaacaagtcatcagctgttttcataagttct 35378511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 35379053 - 35379003
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| |||||||| |||||||| |||||||||| ||||| |||||||||||    
T  35379053 ttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttca 35379003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 43827984 - 43827942
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    ||||||||| ||| || ||||||||||||||||||||||||||    
T  43827984 aaataagttaaaagcaacttatgaacatgtcataagctgtttt 43827942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 680541 - 680586
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||| ||||||||  |||| ||||||||||||||||||||||    
T  680541 aaaataagctgaaaacagtttataaacatgtcataagctgttttca 680586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 1056166 - 1056113
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaa 475  Q
    |||| |||| ||| |||||||| || |||||||||||||||| |||||||||||    
T  1056166 ttatgaaaacaagctgaaaacaactaatgaacatgtcataagttgttttcacaa 1056113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 7928336 - 7928275
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaaca-tgtc-ataagctgttttcacaagttctt 481  Q
    |||| |||||||| |||||||| |||||||||| |||| |||||||||||||| ||||||||    
T  7928336 ttatgaaaataagctgaaaacaacttatgaacaatgtccataagctgttttcaaaagttctt 7928275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 33256778 - 33256823
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||    
T  33256778 aaaataagctgagaacagtttatgaacatgtcataagctgttttca 33256823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 33941949 - 33941998
Alignment:
Q  429 aataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    |||||||||||| || ||||||||| ||||||||| |||||||| |||||    
T  33941949 aataagttgaaagcagcttatgaacttgtcataagttgttttcataagtt 33941998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 34652067 - 34652026
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  34652067 aaataagttgaaaacagcttatggacatgtcataagttgttt 34652026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Complemental strand, 41809276 - 41809223
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttctt 481  Q
    ||||||| | |||||| ||||||||||||||||||| ||||| |||||| ||||    
T  41809276 aaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctctt 41809223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 41812123 - 41812070
Alignment:
Q  428 aaataagttgaaaacaccttatgaaca-tgtcataagctgttttcacaagttct 480  Q
    |||||||||||||| | |||||||| | |||||||||||||||||| |||||||    
T  41812123 aaataagttgaaaaaagcttatgaaaaatgtcataagctgttttcaaaagttct 41812070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 609
Target Start/End: Original strand, 680487 - 680563
Alignment:
Q  533 ttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaatagtttat 609  Q
    ||||||| | |||| |||| |||||||||||||| |||||||  |  |||| |||||||||| |||||| |||||||    
T  680487 ttgttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttat 680563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 1939363 - 1939323
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgtt 468  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  1939363 aaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 2091066 - 2091014
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttc 479  Q
    |||||||| |||||||| ||||||| ||| ||||||||||| |||| ||||||    
T  2091066 aaaataagctgaaaacagcttatgaccatatcataagctgtattcataagttc 2091014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 10285899 - 10285943
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||||||||||| |||||| |||||||||||| | ||||||    
T  10285899 aaataagttgaaaacagcttatggacatgtcataagttattttca 10285943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 10567095 - 10567143
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaa 475  Q
    ||||| || |||||||| ||||||| ||||||||||||||||| |||||    
T  10567095 aaaattagctgaaaacaacttatgatcatgtcataagctgtttccacaa 10567143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 601
Target Start/End: Complemental strand, 12464559 - 12464491
Alignment:
Q  533 ttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaaa 601  Q
    ||||||||| |||  |||| |||||||||||||| ||||||| ||  |||| |||||||||| ||||||    
T  12464559 ttgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaa 12464491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 38809365 - 38809417
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||||||  |||| |||||||||||||||| ||| | |||||||    
T  38809365 aaataagttgaaaacagattattaacatgtcataagctggtttaataagttct 38809417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 610
Target Start/End: Original strand, 40279416 - 40279468
Alignment:
Q  558 ttttcataacctatctttgatgacttatgaaaataagttgaaaatagtttatg 610  Q
    ||||||||| |||| || ||  |||||||||||||||||||||| ||||||||    
T  40279416 ttttcataagctatattggagaacttatgaaaataagttgaaaacagtttatg 40279468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 43717173 - 43717117
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    |||| |||||||| |||||||| | |||||| ||||| ||||||||||||| |||||    
T  43717173 ttatgaaaataagctgaaaacaacctatgaaaatgtcctaagctgttttcataagtt 43717117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 471
Target Start/End: Complemental strand, 98671 - 98628
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttc 471  Q
    |||||||||||||||| ||||||||||||||||||||| |||||    
T  98671 aaataagttgaaaacagcttatgaacatgtcataagctattttc 98628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 28300336 - 28300286
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||| ||||||||||||||||| |||| |||||||||||| ||||||||||    
T  28300336 ttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttca 28300286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 23819122 - 23819171
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttc 471  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||||||||    
T  23819122 ttatagaaataagatgaaaacaacttatggacatgtcataagctgttttc 23819171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 480
Target Start/End: Complemental strand, 37863982 - 37863933
Alignment:
Q  431 taagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||| |||||||| ||||||||| |||||||||||||||||| |||||||    
T  37863982 taaggtgaaaacaacttatgaacgtgtcataagctgttttcataagttct 37863933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 38515866 - 38515920
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    ||||||||||||| |||||||| |||||||  |||||||||||||||||| ||||||    
T  38515866 ttataaaaataagctgaaaacagcttatga--atgtcataagctgttttcccaagtt 38515920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 1137759 - 1137803
Alignment:
Q  436 tgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||    
T  1137759 tgaaaacaacttatgaacatgtcataagatgttttcataagttct 1137803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 1965980 - 1966024
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||    
T  1965980 aaataagttaaaaacagcttatgaacatgtcataagttgttttca 1966024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 17223067 - 17223023
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    |||||||||||||||| |||||||||||||||||| || ||||||    
T  17223067 aaataagttgaaaacagcttatgaacatgtcataaactattttca 17223023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 39178297 - 39178245
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||||||||| ||||| ||| |||||||||| ||||||| |||||||    
T  39178297 aaataagttgaaaacatcttattaacgtgtcataagcggttttcataagttct 39178245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 49939988 - 49939928
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaaca-tgtcataagctgttttcacaagttctt 481  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||| |||||| ||||||||    
T  49939988 ttataataataagctgaaaacagcttatgaacaatgtcataagctcttttcataagttctt 49939928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 600
Target Start/End: Complemental strand, 35571725 - 35571650
Alignment:
Q  525 aagttatgttgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataagttgaaa 600  Q
    ||||||| ||||||| | |||| |||| |||| ||||||||| ||||||| ||  |||| ||||||||||||||||    
T  35571725 aagttatattgttttcgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataagttgaaa 35571650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 470
Target Start/End: Original strand, 56249562 - 56249605
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgtttt 470  Q
    ||||||||||||||| | |||||||| |||||||||||||||||    
T  56249562 aaaataagttgaaaaaagcttatgaaaatgtcataagctgtttt 56249605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 7368087 - 7368041
Alignment:
Q  426 aaaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  7368087 aaaaatatgttgaaagcagcttataaacatgtcataagctgttttca 7368041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 20936260 - 20936210
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagtt 478  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||||| |||||    
T  20936260 aaataaggtgaaaacagcttatgaacatatcataagttgttttcataagtt 20936210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 23459669 - 23459719
Alignment:
Q  430 ataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||||| | ||||| ||||||||||||||| |||||| |||||||    
T  23459669 ataagttgaaaataacttattaacatgtcataagcttttttcataagttct 23459719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 39886682 - 39886632
Alignment:
Q  430 ataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    ||||||||||||||  |||||||||||||||||  || |||||||||||||    
T  39886682 ataagttgaaaacaatttatgaacatgtcataaaatgctttcacaagttct 39886632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 2996611 - 2996656
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttca 472  Q
    ||||||||||||||| | |||||| |||||||||||| ||||||||    
T  2996611 aaaataagttgaaaaaagcttatggacatgtcataagttgttttca 2996656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 25571298 - 25571351
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| |||||||| ||||||||||| |||||| |||||| || |||||||    
T  25571298 aaaataagctgaaaacagcttatgaacatatcataaactgtttccataagttct 25571351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 29263409 - 29263450
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttt 469  Q
    ||||||| |||||||| ||||||||||| |||||||||||||    
T  29263409 aaataagctgaaaacaacttatgaacatatcataagctgttt 29263450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 594
Target Start/End: Complemental strand, 16200066 - 16200006
Alignment:
Q  534 tgtttttgcataaactattagctattttcataacctatctttgatgacttatgaaaataag 594  Q
    |||||||| |||  |||| |||| ||||||||| ||||||| || ||||||||||||||||    
T  16200066 tgtttttgtatatgctataagctgttttcataagctatcttggaggacttatgaaaataag 16200006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 19250580 - 19250620
Alignment:
Q  423 tataaaaataagttgaaaacaccttatgaacatgtcataag 463  Q
    |||||||||||||||||| || |||||| ||||||||||||    
T  19250580 tataaaaataagttgaaatcagcttatggacatgtcataag 19250620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 19304973 - 19305017
Alignment:
Q  436 tgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| |||||| |||||||||||||||||| ||||| ||||    
T  19304973 tgaaaacaacttatggacatgtcataagctgtttccacaaattct 19305017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 29388823 - 29388875
Alignment:
Q  428 aaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||||  |||||  ||||||||||||| |||||||||||| ||||||||    
T  29388823 aaataagtttgaaacagattatgaacatgtcttaagctgttttcgcaagttct 29388875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 42641660 - 42641616
Alignment:
Q  438 aaaacaccttatgaacatgtcataagctgttttcacaagttcttg 482  Q
    |||||| ||| ||||||||||||||| |||||||| |||||||||    
T  42641660 aaaacagcttgtgaacatgtcataaggtgttttcataagttcttg 42641616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 473
Target Start/End: Complemental strand, 55414457 - 55414405
Alignment:
Q  422 ttataaaaataagttgaaaacaccttatgaaca-tgtcataagctgttttcac 473  Q
    |||| ||||||||||||||| | |||||||| | |||||||||||||||||||    
T  55414457 ttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgttttcac 55414405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Complemental strand, 9669 - 9616
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgttttcacaagttct 480  Q
    |||||||| | |||||| ||||||||||||| ||||| |||||||| |||||||    
T  9669 aaaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttct 9616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 2804 - 2844
Alignment:
Q  427 aaaataagttgaaaacaccttatgaacatgtcataagctgt 467  Q
    ||||||||||||||| | ||| |||||||||||||||||||    
T  2804 aaaataagttgaaaatagcttgtgaacatgtcataagctgt 2844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University