View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1958_high_10 (Length: 264)

Name: NF1958_high_10
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1958_high_10
NF1958_high_10
[»] chr2 (14 HSPs)
chr2 (13-245)||(29908306-29908527)
chr2 (144-239)||(8556161-8556256)
chr2 (175-245)||(6903777-6903847)
chr2 (182-244)||(37057161-37057223)
chr2 (144-245)||(12874166-12874267)
chr2 (175-243)||(29132699-29132767)
chr2 (175-245)||(4616700-4616770)
chr2 (175-245)||(16710265-16710335)
chr2 (175-245)||(32737934-32738004)
chr2 (175-245)||(41192445-41192515)
chr2 (176-245)||(5290762-5290831)
chr2 (175-245)||(5814597-5814668)
chr2 (171-214)||(11815517-11815560)
chr2 (171-207)||(29908451-29908487)
[»] chr4 (27 HSPs)
chr4 (125-243)||(38131342-38131461)
chr4 (146-244)||(27761193-27761291)
chr4 (128-245)||(49065613-49065731)
chr4 (128-242)||(21713230-21713345)
chr4 (144-240)||(31822963-31823059)
chr4 (175-245)||(9242981-9243051)
chr4 (175-245)||(37694574-37694644)
chr4 (175-245)||(42118929-42118999)
chr4 (175-245)||(2777929-2777999)
chr4 (175-245)||(14289664-14289734)
chr4 (171-233)||(21058683-21058745)
chr4 (175-245)||(24608216-24608286)
chr4 (175-245)||(43502347-43502417)
chr4 (175-245)||(54703592-54703662)
chr4 (175-245)||(49261847-49261918)
chr4 (173-207)||(26973372-26973406)
chr4 (170-208)||(32310356-32310394)
chr4 (171-233)||(42563153-42563215)
chr4 (175-245)||(52789350-52789420)
chr4 (171-208)||(850633-850670)
chr4 (175-236)||(8932529-8932589)
chr4 (179-244)||(13867846-13867910)
chr4 (171-208)||(39463078-39463115)
chr4 (171-207)||(21058711-21058747)
chr4 (175-239)||(33985517-33985581)
chr4 (171-207)||(38131387-38131423)
chr4 (171-207)||(48577410-48577446)
[»] chr7 (15 HSPs)
chr7 (125-245)||(27874087-27874208)
chr7 (128-242)||(39476435-39476550)
chr7 (146-245)||(41219437-41219536)
chr7 (175-245)||(8260834-8260904)
chr7 (158-239)||(18239475-18239556)
chr7 (175-245)||(39283944-39284014)
chr7 (175-245)||(29714254-29714323)
chr7 (204-245)||(37524219-37524260)
chr7 (175-245)||(4035214-4035284)
chr7 (175-236)||(3742437-3742498)
chr7 (171-207)||(38455066-38455102)
chr7 (204-245)||(14678288-14678329)
chr7 (204-245)||(34354451-34354492)
chr7 (171-208)||(38455068-38455105)
chr7 (171-207)||(27874127-27874163)
[»] chr3 (20 HSPs)
chr3 (144-245)||(48086766-48086867)
chr3 (129-240)||(2182556-2182668)
chr3 (125-245)||(39415249-39415370)
chr3 (126-245)||(25574731-25574851)
chr3 (128-245)||(49742161-49742279)
chr3 (128-245)||(23029554-23029672)
chr3 (175-245)||(6462950-6463020)
chr3 (175-245)||(6755777-6755847)
chr3 (128-245)||(41649853-41649971)
chr3 (175-245)||(49501594-49501664)
chr3 (175-236)||(47560448-47560509)
chr3 (169-245)||(14995134-14995210)
chr3 (203-245)||(37282182-37282224)
chr3 (175-234)||(53401547-53401606)
chr3 (175-245)||(7956323-7956393)
chr3 (171-208)||(29523212-29523249)
chr3 (171-207)||(2182591-2182627)
chr3 (175-207)||(23029596-23029628)
chr3 (171-207)||(48086791-48086827)
chr3 (175-207)||(49742205-49742237)
[»] chr1 (22 HSPs)
chr1 (127-245)||(41871638-41871757)
chr1 (128-242)||(39222609-39222724)
chr1 (128-242)||(46923684-46923799)
chr1 (158-239)||(48566695-48566776)
chr1 (175-245)||(5770624-5770694)
chr1 (175-242)||(3660242-3660309)
chr1 (177-244)||(21482862-21482929)
chr1 (175-245)||(5766885-5766955)
chr1 (175-245)||(33686606-33686676)
chr1 (128-242)||(30308285-30308398)
chr1 (175-245)||(10308428-10308498)
chr1 (175-244)||(7014837-7014906)
chr1 (175-235)||(30858451-30858511)
chr1 (177-245)||(47983638-47983706)
chr1 (201-245)||(49597173-49597217)
chr1 (175-242)||(22605393-22605460)
chr1 (175-245)||(12926782-12926852)
chr1 (175-240)||(23603024-23603090)
chr1 (176-241)||(20447122-20447186)
chr1 (176-241)||(20532885-20532949)
chr1 (175-207)||(39222651-39222683)
chr1 (171-207)||(41871681-41871717)
[»] chr8 (13 HSPs)
chr8 (130-242)||(34471657-34471770)
chr8 (128-242)||(43693630-43693745)
chr8 (175-245)||(15743251-15743321)
chr8 (175-243)||(1217746-1217814)
chr8 (174-245)||(4759270-4759341)
chr8 (175-242)||(5913181-5913248)
chr8 (178-245)||(23542805-23542872)
chr8 (175-245)||(9039620-9039690)
chr8 (175-245)||(42182615-42182685)
chr8 (171-207)||(34471694-34471730)
chr8 (173-207)||(5944125-5944159)
chr8 (171-233)||(20520418-20520480)
chr8 (172-205)||(20669802-20669835)
[»] chr6 (10 HSPs)
chr6 (157-245)||(319161-319249)
chr6 (175-245)||(13312541-13312611)
chr6 (179-245)||(23912312-23912378)
chr6 (175-245)||(30634177-30634247)
chr6 (171-208)||(7526809-7526846)
chr6 (171-214)||(4362406-4362449)
chr6 (210-245)||(9521402-9521437)
chr6 (177-245)||(3515280-3515348)
chr6 (171-207)||(7526807-7526843)
chr6 (175-243)||(11598974-11599042)
[»] chr5 (16 HSPs)
chr5 (128-245)||(1172998-1173116)
chr5 (175-240)||(7084039-7084104)
chr5 (175-245)||(1081950-1082020)
chr5 (175-245)||(6427238-6427308)
chr5 (190-242)||(41758777-41758829)
chr5 (175-245)||(12144001-12144071)
chr5 (175-245)||(11125847-11125916)
chr5 (175-242)||(16100835-16100902)
chr5 (171-206)||(19401898-19401933)
chr5 (175-245)||(2786687-2786757)
chr5 (175-245)||(18172197-18172267)
chr5 (175-245)||(40034064-40034134)
chr5 (191-245)||(43147488-43147542)
chr5 (171-207)||(2740562-2740598)
chr5 (170-202)||(3461481-3461513)
chr5 (177-245)||(28784832-28784900)
[»] scaffold0753 (1 HSPs)
scaffold0753 (178-245)||(3956-4023)
[»] scaffold0217 (1 HSPs)
scaffold0217 (175-243)||(25553-25621)
[»] scaffold0051 (1 HSPs)
scaffold0051 (187-245)||(20060-20118)
[»] scaffold1212 (1 HSPs)
scaffold1212 (171-200)||(1801-1830)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 29908306 - 29908527
Alignment:
Q  13 attctcaaggtggatggctgtcaaaatagattgggcctgcccaatggggccaactagaccgacctagggactc-tgttgaaatagaatcctgctctttat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||    
T  29908306 attctcaaggtggatggctgtcaaaatagattgggcctgcccaatggggccaactagaccgacctagggactcttgttgaaatagaatgttgctcttcat 29908405  T
Q  112 catgcacattttgccagcacattttgctcgc-acctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcacct 210  Q
                 ||||||||||||||||||  |||||||||||  ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  29908406 -------------ccagcacattttgctcgcgccctgcagctatgccaaaaatgcccttgcgcaagttaagttacgctgcgtgacttaacttgcgcacct 29908492  T
Q  211 tataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||| ||||||    
T  29908493 tataacctctgcgtgacttaagtcacgcgccactg 29908527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 8556161 - 8556256
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    |||||||| ||  ||||||||||||| ||| |||||||||||||  |||||||||||| ||||||||||||| || || |||||||||||||||||    
T  8556161 cctgcagccatgccaaaaatgctcttgcgctagttaagtcacgcaacgtgacttaactggcgcaccttataatctatgtgtgacttaagtcacgca 8556256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 6903847 - 6903777
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||   ||||| ||||| || |||||| |||||||||||||||||||    
T  6903847 agttaagtcacgctgcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgcaccactg 6903777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 37057161 - 37057223
Alignment:
Q  182 tcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    ||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||||||    
T  37057161 tcacgctgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccact 37057223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 12874166 - 12874267
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||| | ||| |||| |||||||| ||  |||||||||| ||  |||||||||||  |||| |||||||| |||| ||||||||||||||||||||||    
T  12874166 cctgcaaccataccaaatatgctcttgcgttagttaagtcatgcaacgtgacttaaccagcgcgccttataatctctacgtgacttaagtcacgcaccac 12874265  T
Q  244 tg 245  Q
    ||    
T  12874266 tg 12874267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 29132767 - 29132699
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||||||||  ||||||||||||  ||||||||||||  ||| ||||||||||||||||||||||    
T  29132767 agttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgacttaagtcacgcaccac 29132699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 4616770 - 4616700
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||||| |||||||||||  ||||| | | || |||||||||||||||||||||| ||||||    
T  4616770 agttaagtcacgctgtgtgacttaactcacgcacttcacaagctctgcgtgacttaagtcacgccccactg 4616700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 16710335 - 16710265
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || ||||||||||  |||| ||||||   ||||||||| ||||||||||||||||||    
T  16710335 agttaagtcacgcagcatgacttaactaacgcatcttatatgttctgcgtgagttaagtcacgcaccactg 16710265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 32738004 - 32737934
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| | |||||||||||    ||||||||||||  | ||||||||||||||||||||||||||    
T  32738004 agttaagtcacacagcgtgacttaataaacgcaccttataagttgtgcgtgacttaagtcacgcaccactg 32737934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 41192515 - 41192445
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || ||||| |||||||||||||| ||||||||    
T  41192515 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgtgtgacttaagtcacacaccactg 41192445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 5290831 - 5290762
Alignment:
Q  176 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||| |||||||||||   | ||||   || |||||||||||||||||||||||||||||    
T  5290831 gttaagtcacgctgtgtgacttaactcatgtacctctcaagctctgcgtgacttaagtcacgcaccactg 5290762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5814668 - 5814597
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgac-ttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || ||||||||||| ||||||||||||| ||||    
T  5814668 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgactttaagtcacgcactactg 5814597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 11815517 - 11815560
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttata 214  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  11815517 cgcaagttaagacacgctgcgtgtcttaacttgcgcacgttata 11815560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 29908487 - 29908451
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  29908487 cgcaagttaagtcacgcagcgtaacttaacttgcgca 29908451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 38131342 - 38131461
Alignment:
Q  125 ccagcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 223  Q
    |||||||||||||||||| || |||||| ||  ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |    
T  38131342 ccagcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttctaacctctgtg 38131441  T
Q  224 tgacttaagtcacgcaccac 243  Q
    ||||||||||||||||||||    
T  38131442 tgacttaagtcacgcaccac 38131461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 27761291 - 27761193
Alignment:
Q  146 tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    |||||| || |||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  27761291 tgcagccatgtcaaaaatgcccttgcgcaagttaagtcacgctgcgtgatttaatttgcgcaccttataatctctgcgtgacttaagtcacgcaccact 27761193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 49065731 - 49065613
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| |||||||||||| |||||||||||||| ||||||||||||| || |||||||    
T  49065731 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgttgcgtgacttaactagcgcaccttataaactatgcgtga 49065632  T
Q  227 cttaagtcacgcaccactg 245  Q
    |||||||||||||||||||    
T  49065631 cttaagtcacgcaccactg 49065613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 21713345 - 21713230
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||||||||||| |||||| |||||| ||||||||||||| || ||||||     
T  21713345 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgatttaactagcgcaccttataatctatgcgtgg 21713246  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  21713245 cttaagtcacgcacca 21713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 31822963 - 31823059
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcac 240  Q
    |||||||| ||  ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||| ||||||||    
T  31822963 cctgcagccatgccaaaaatgcccttgcgcaagttaagccacgctgtgtgacttaacttgcgcaccttataagctttgcgtgagttaactcacgcac 31823059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 9243051 - 9242981
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| || ||||||||||||  | |||||||||| |||||||||||||||||||||||||||||    
T  9243051 agttaagtcacactacgtgacttaactcacacaccttataatctctgcgtgacttaagtcacgcaccactg 9242981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 37694644 - 37694574
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| |||||||||||||  ||||||| | || |||||| ||||||||||||||||||||||    
T  37694644 agttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcatgacttaagtcacgcaccactg 37694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 42118929 - 42118999
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  | ||||| | ||  ||||||||||||||||||||||||||||    
T  42118929 agttaagtcacgctgcgtgacttaactcacacacctcacaagttctgcgtgacttaagtcacgcaccactg 42118999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 2777929 - 2777999
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| |||||||||||||  ||||||||||||  ||||||| ||||||||||| | ||||||    
T  2777929 agttaagtcacgcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcacacgccactg 2777999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 14289664 - 14289734
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| | | ||||||||||| |||||||||||||  | || |||||||||||||| ||||||||    
T  14289664 agttaagtcacacagtgtgacttaactagcgcaccttataatatatgtgtgacttaagtcacacaccactg 14289734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 21058745 - 21058683
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 233  Q
    |||||||||||||||||||||||||||||| ||||||| ||    ||| ||||||||||||||    
T  21058745 cgcaagttaagtcacgctgcgtgacttaacatgcgcacgttgagtcctatgcgtgacttaagt 21058683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 24608286 - 24608216
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| |||| ||| ||||||||| ||||||||||||| || || |||| |||||||||||| |||||    
T  24608286 agttaagttacgcagcgagacttaactagcgcaccttataatctttgtgtgagttaagtcacgcatcactg 24608216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 43502417 - 43502347
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| |||| ||| || ||||| ||||||||| | || |||||||||||||||||| ||||||||||    
T  43502417 agttaagtaacgcagcgagatttaacatgcgcacctcacaagctctgcgtgacttaagtcgcgcaccactg 43502347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 54703592 - 54703662
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| |||| ||| |||||||| | ||||||| | || |||||||||||||||||| ||||||||||    
T  54703592 agttaagtaacgcagcgagacttaacatacgcacctcacaagctctgcgtgacttaagtcgcgcaccactg 54703662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 49261918 - 49261847
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || ||||||||||  ||||||| ||| |  || |||||||||||||||||||||||||    
T  49261918 agttaagtcacgcagcatgacttaactcacgcacctaatagagttcagcgtgacttaagtcacgcaccactg 49261847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 26973372 - 26973406
Alignment:
Q  173 caagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||||||||||||||||||||||||||||| ||||    
T  26973372 caagttaagtcacgctgcgtgacttaacttacgca 26973406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 32310394 - 32310356
Alignment:
Q  170 acgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  32310394 acgcaagtaaagtcacgctgcgtgtcttaacttgcgcac 32310356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 42563215 - 42563153
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 233  Q
    |||||||||||||||||||||||| ||||| ||||||  || || | | ||||||||||||||    
T  42563215 cgcaagttaagtcacgctgcgtgatttaacctgcgcatgttgtatcttatgcgtgacttaagt 42563153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 52789350 - 52789420
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||| |  |||| |||||||   ||||||| | || |||||||||||||||||||||||||||||    
T  52789350 agttaagtcaagtagcgtcacttaacacacgcacctcacaaactctgcgtgacttaagtcacgcaccactg 52789420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 850670 - 850633
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  850670 cgcaagttaagtcatgctgcgtgtcttaacttgcgcac 850633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 8932529 - 8932589
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 236  Q
    ||||||||||| | | |||||||||||  |||||||||| | ||||||||||||||||||||    
T  8932529 agttaagtcacacagtgtgacttaactcacgcaccttat-agctctgcgtgacttaagtcac 8932589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 13867910 - 13867846
Alignment:
Q  179 aagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    |||||||||||||||||||||||   |||||| || | ||| || |||||||||||||||||||||    
T  13867910 aagtcacgctgcgtgacttaactcatgcacctaat-agctcagcatgacttaagtcacgcaccact 13867846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 39463078 - 39463115
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  39463078 cgcaagttaagttacgctgcgtgacttaacatgcgcac 39463115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 21058711 - 21058747
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||| |||||||||||| |||||||||||||||||||    
T  21058711 cgcatgttaagtcacgcagcgtgacttaacttgcgca 21058747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 33985581 - 33985517
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    |||||||||||||  ||||  ||||||  ||||||| | || |||||||||||||||||||||||    
T  33985581 agttaagtcacgcaacgtggtttaactcacgcacctcacaaactctgcgtgacttaagtcacgca 33985517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 38131423 - 38131387
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||||||||||||| || |||||||||||||||||||    
T  38131423 cgcaagttaagtcatgcagcgtgacttaacttgcgca 38131387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 48577410 - 48577446
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  48577410 cgcaagttaagacacgttgcgtgacttaacttgcgca 48577446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 27874208 - 27874087
Alignment:
Q  125 ccagcacattttgctcgca-cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 223  Q
    ||||||||||||||||||  |||||||| ||  ||||||||  ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  27874208 ccagcacattttgctcgcgtcctgcagccatgccaaaaatgtccttgcgcaagttaagtcacgctgcgtggcttaacttgcgcaccatataacctctgcg 27874109  T
Q  224 tgacttaagtcacgcaccactg 245  Q
    ||||||||| ||||||||||||    
T  27874108 tgacttaagccacgcaccactg 27874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 39476435 - 39476550
Alignment:
Q  128 gcacattttgctcgcacct-gcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| ||| ||||| || | |||||||| ||||||  |||||||||| || ||||||||||||| ||||||||||||| || |||||||    
T  39476435 gcacattttgctcgcgccttgcagccatgttaaaaatgcccttacgttagttaagtcatgcagcgtgacttaactagcgcaccttataatctatgcgtga 39476534  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  39476535 cttaagtcacgcacca 39476550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 41219536 - 41219437
Alignment:
Q  146 tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||| || |||||||||   || |||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  41219536 tgcagccatgtcaaaaatgtcattgcgcaagttaagttacactgcgtgatttaacttgcgcatcttataacctctgcgtgacttaagtcacgcatcactg 41219437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 8260834 - 8260904
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  8260834 agttaagtcacgctgcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgcaccactg 8260904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 18239556 - 18239475
Alignment:
Q  158 aaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||    
T  18239556 aaaaatgcccttgcacaagttaagtcacgctgcgtgacttaacttgtacaccttataacatctgtgtgacttaagtcacgca 18239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 39283944 - 39284014
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||||| |||||||  ||||||| |||| |||||||||||||||||||||||||||||    
T  39283944 agttaagtcacgcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgcaccactg 39284014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 29714254 - 29714323
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||||||||||||||| |  |||||||||| | ||||||||||||||||||| |||||||||    
T  29714254 agttaagtcacgctgcgtgacttaaatcacgcaccttat-agctctgcgtgacttaagtcatgcaccactg 29714323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 37524260 - 37524219
Alignment:
Q  204 cgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  37524260 cgcaccttataagctctgcgtgacttaagtcacgcaccactg 37524219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 4035284 - 4035214
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||   |||||| | || | |||||||||||||||||||||||||||    
T  4035284 agttaagtcacgcagcgagacttaactcatgcacctcacaatccctgcgtgacttaagtcacgcaccactg 4035214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 3742498 - 3742437
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 236  Q
    |||||||||| || |||||| |||||| |||||| |||||| ||||| ||||||||||||||    
T  3742498 agttaagtcatgcagcgtgatttaactagcgcactttataatctctgtgtgacttaagtcac 3742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 38455102 - 38455066
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38455102 cgcaagttaagacacgctgcgtgacttaacttgcgca 38455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 14678288 - 14678329
Alignment:
Q  204 cgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  14678288 cgcacctcacaacctctacgtgacttaagtcacgcaccactg 14678329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 34354492 - 34354451
Alignment:
Q  204 cgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  34354492 cgcaccttatatgctctgcgtgacttaagtcacgtaccactg 34354451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 38455068 - 38455105
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  38455068 cgcaagttaagtcacgcagcgtgtcttaacttgcgcac 38455105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 27874127 - 27874163
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  27874127 cgcaagttaagccacgcagcgtgacttaacttgcgca 27874163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 48086766 - 48086867
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||| || |||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48086766 cctgcagccatgtcaaaaatacccttgcgcaagttaagtcacactgcgtgacttaacttgcgcaccttataacctctgcatgacttaagtcacgcaccac 48086865  T
Q  244 tg 245  Q
    ||    
T  48086866 tg 48086867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 2182668 - 2182556
Alignment:
Q  129 cacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgac 227  Q
    ||||||||||||||||| |||||| || | |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  2182668 cacattttgctcgcaccatgcagccatgttaaaaatgcccttgcgtaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcttgat 2182569  T
Q  228 ttaagtcacgcac 240  Q
    |||||||||||||    
T  2182568 ttaagtcacgcac 2182556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 39415249 - 39415370
Alignment:
Q  125 ccagcacattttgctcgca-cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 223  Q
    |||| |||||||||||||  |||||| | ||  ||||||||  ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39415249 ccagtacattttgctcgcgtcctgcaaccatgccaaaaatggccttgcacaaattaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 39415348  T
Q  224 tgacttaagtcacgcaccactg 245  Q
    ||||||||||||||||||||||    
T  39415349 tgacttaagtcacgcaccactg 39415370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 25574731 - 25574851
Alignment:
Q  126 cagcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgt 224  Q
    |||||||||||| |||| || |||||| || |||||||||| ||| |||||||||||||| || ||||||||||||||| ||||||| ||||||||| ||    
T  25574731 cagcacattttggtcgcgccctgcagccatgtcaaaaatgcccttgcgcaagttaagtcatgccgcgtgacttaacttgtgcaccttgtaacctctgtgt 25574830  T
Q  225 gacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||    
T  25574831 gacttaagtcacgcaccactg 25574851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 49742279 - 49742161
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||| |||||||| |||||| ||  ||||||||  ||| ||| ||||||||||||| |||||||||||||  ||||||| | || ||||||||||    
T  49742279 gcacattttactcgcaccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtga 49742180  T
Q  227 cttaagtcacgcaccactg 245  Q
    |||||||||||||||||||    
T  49742179 cttaagtcacgcaccactg 49742161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 23029554 - 23029672
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||||||||||| |||||||||||||  |||| || |||| || |||||||    
T  23029554 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtga 23029653  T
Q  227 cttaagtcacgcaccactg 245  Q
    ||||||||| |||||||||    
T  23029654 cttaagtcatgcaccactg 23029672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 6462950 - 6463020
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||| ||||||||||||||  |||||||||||| || || |||||||||||||||||||||||    
T  6462950 agttaagtcacgttgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgcaccactg 6463020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 6755847 - 6755777
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  |||||||||||| || || |||||||||||||| ||||||||    
T  6755847 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacacaccactg 6755777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 41649853 - 41649971
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| || |||||||||||||| || || ||||||||||| ||| || ||||||  | ||||| | || ||||| ||||    
T  41649853 gcacattttgctcgcgccctgcagccatgtcaaaaatgctcttgcgtaaattaagtcacgcagcgagatttaactcacacacctcacaagctctgtgtga 41649952  T
Q  227 cttaagtcacgcaccactg 245  Q
    |||||||||||||| ||||    
T  41649953 cttaagtcacgcactactg 41649971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 49501664 - 49501594
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| | ||| |||||||||  ||||||| | || |||||||||||||||||||||||||||||    
T  49501664 agttaagtcacacagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 49501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 47560509 - 47560448
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 236  Q
    ||||||||||||| |||||||||||||  | ||||||||||  |||||||||||||||||||    
T  47560509 agttaagtcacgccgcgtgacttaactcacacaccttataagttctgcgtgacttaagtcac 47560448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 14995134 - 14995210
Alignment:
Q  169 tacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||| ||||||||||||| |||||||||||||  | |||||||||| || || |||| ||||||||| ||||||||    
T  14995134 tacgctagttaagtcacgcagcgtgacttaactaacacaccttataatctttgtgtgagttaagtcacacaccactg 14995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 37282224 - 37282182
Alignment:
Q  203 gcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  37282224 gcgcaccttataagctttgcgtgacttaagtcacgcaccactg 37282182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 53401606 - 53401547
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtc 234  Q
    |||||||| |||| ||| |||||||||  ||||||| |||| ||||||||||||||||||    
T  53401606 agttaagttacgcagcgagacttaactcacgcacctcataagctctgcgtgacttaagtc 53401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 7956393 - 7956323
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || |||||||||| ||||||||||||   | ||||||| ||||| ||| ||||||||    
T  7956393 agttaagtcacgcagcatgacttaactagcgcaccttatatggtgtgcgtgagttaagacacacaccactg 7956323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 29523249 - 29523212
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29523249 cgcaagttaagtcacgctgcatgtcttaacttgcgcac 29523212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 2182591 - 2182627
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  2182591 cgcaagttaagtcacgcagcgtgacttaacttacgca 2182627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 23029628 - 23029596
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||||||||||||| |||||    
T  23029628 agttaagtcacgctgcgtgacttaactagcgca 23029596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 48086827 - 48086791
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| | |||||||||||||||||    
T  48086827 cgcaagttaagtcacgcagtgtgacttaacttgcgca 48086791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 49742205 - 49742237
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||||||||||||| |||||    
T  49742205 agttaagtcacgctgcgtgacttaactagcgca 49742237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 41871638 - 41871757
Alignment:
Q  127 agcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtg 225  Q
    |||||||||||||||| || | |||| ||  ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  41871638 agcacattttgctcgcgccctacagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttataacctctgtgtg 41871737  T
Q  226 acttaagtcacgcaccactg 245  Q
    |||||||| |||||||||||    
T  41871738 acttaagtaacgcaccactg 41871757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 39222609 - 39222724
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||  ||| ||| ||||||||||||| ||||||||||||| |||| |||||||| || |||||||    
T  39222609 gcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactagcgcgccttataatctatgcgtga 39222708  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  39222709 cttaagtcacgcacca 39222724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 46923684 - 46923799
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||| |||||||  |||||||||||| ||||||||||||| || |||||||    
T  46923684 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttacgtcacgcaacgtgacttaactagcgcaccttataatctatgcgtga 46923783  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  46923784 cttaagtcacgcacca 46923799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 48566695 - 48566776
Alignment:
Q  158 aaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    ||||||| |||| || ||||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  48566695 aaaaatgttcttgcgtaagttaagtcacgttgcgtgacttaacttgcagaccttataacctttgcgtgacttaagtcacgca 48566776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5770694 - 5770624
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  |||||||||||| || |||||| |||||||||||||||||||    
T  5770694 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgcgtggcttaagtcacgcaccactg 5770624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 3660309 - 3660242
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||| | | ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  3660309 agttaagtcgcacagcgtgacttaactagcgcaccttataagctctgcgtgacttaagtcacgcacca 3660242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 21482862 - 21482929
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    ||||||||||| |||||||||||||  | |||||||||| ||||||||||||||||||||||||||||    
T  21482862 ttaagtcacgcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgcaccact 21482929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5766955 - 5766885
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||| || |||||||  | |||||||||| || |||||| |||||||||||||||||||    
T  5766955 agttaagtcacgctgcatggcttaactcacacaccttataagctttgcgtggcttaagtcacgcaccactg 5766885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 33686676 - 33686606
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || ||||||||||||||||||||||||||    
T  33686676 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 33686606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 30308285 - 30308398
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  |||||||| | || ||  ||||||||||||| ||||||||||||  | |||||||||||| | |  ||||    
T  30308285 gcacattttgctcgcgccctgcagccatgccaaaaatgtttttgcgttagttaagtcacgcagcgtgacttaaccagtgcaccttataacttat--gtga 30308382  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  30308383 cttaagtcacgcacca 30308398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 10308428 - 10308498
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || || |||||||||||||||||||||||    
T  10308428 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccactg 10308498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 7014906 - 7014837
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    ||||||||||| | ||| |||||||||  ||||||| | || |||| |||||||||||||||||||||||    
T  7014906 agttaagtcacacagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccact 7014837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 30858451 - 30858511
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtca 235  Q
    |||||||||| || |||||||||||||  ||||||||| || ||||| |||||||||||||    
T  30858451 agttaagtcatgcagcgtgacttaactcacgcaccttacaagctctgtgtgacttaagtca 30858511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 47983638 - 47983706
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| |||||||||||||  |||||||||||   ||||||||| |||||||||  |||||||    
T  47983638 ttaagtcacgcagcgtgacttaactaacgcaccttatatgttctgcgtgagttaagtcacttaccactg 47983706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 49597173 - 49597217
Alignment:
Q  201 ttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||| |||||||| || |||||||||||||||||||||||||    
T  49597173 ttgcgcatcttataacttcagcgtgacttaagtcacgcaccactg 49597217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 22605393 - 22605460
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||| ||| ||||||||||| |  ||||||| | || |||| |||||||||||||||||||||    
T  22605393 agttaagtcgcgcagcgtgacttaagtcacgcacctcacaagctctacgtgacttaagtcacgcacca 22605460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 12926782 - 12926852
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||   |||||| | || ||||||| ||||||||||| |||||||||    
T  12926782 agttaagtcacgcagcgagacttaactcatgcacctcacaagctctgcgcgacttaagtcatgcaccactg 12926852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 23603090 - 23603024
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcac 240  Q
    |||||||||||| |||||||||||||| | ||| || ||| | ||| ||||||||||||||||||||    
T  23603090 agttaagtcacgttgcgtgacttaactcgtgcatctaatatatctcagcgtgacttaagtcacgcac 23603024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 20447122 - 20447186
Alignment:
Q  176 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacc 241  Q
    ||||||||||||||||||||||||||  | ||| |||| | || |||||||||||||| |||||||    
T  20447122 gttaagtcacgctgcgtgacttaactcacacacgttat-agctttgcgtgacttaagttacgcacc 20447186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 20532885 - 20532949
Alignment:
Q  176 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacc 241  Q
    ||||||||||||||||||||||||||  | ||| |||| | || |||||||||||||| |||||||    
T  20532885 gttaagtcacgctgcgtgacttaactcacacacgttat-agctttgcgtgacttaagttacgcacc 20532949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 39222683 - 39222651
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||||||||||||| |||||    
T  39222683 agttaagtcacgctgcgtgacttaactagcgca 39222651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 41871717 - 41871681
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||||||||||||| || |||||||||||||||||||    
T  41871717 cgcaagttaagtcatgcagcgtgacttaacttgcgca 41871681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 34471770 - 34471657
Alignment:
Q  130 acattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgact 228  Q
    ||||||||||||| || |||||| || |||||||||   || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  34471770 acattttgctcgcgccctgcagccatgtcaaaaatgtctttgcgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataaactatgcgtgact 34471671  T
Q  229 taagtcacgcacca 242  Q
    ||||||||||||||    
T  34471670 taagtcacgcacca 34471657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 43693745 - 43693630
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||  ||| ||| ||||| ||||||| ||||||||||||| ||||||||||||| || || ||||    
T  43693745 gcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaggtcacgcagcgtgacttaactagcgcaccttataatctatgtgtga 43693646  T
Q  227 cttaagtcacgcacca 242  Q
    ||||| ||||||||||    
T  43693645 cttaattcacgcacca 43693630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 15743321 - 15743251
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||  |||||||||  ||||||| | || |||||||||||||||||||||||||||||    
T  15743321 agttaagtcacgcagcaagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 15743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 1217746 - 1217814
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||||||| ||||||||||||||  ||||||| | || || || |||||||||||||||||||||    
T  1217746 agttaagtcacgttgcgtgacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccac 1217814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 4759341 - 4759270
Alignment:
Q  174 aagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||||  |||||||||||   ||||||| | || ||||||||||||||||||| |||||||||    
T  4759341 aagttaagtcacgcaacgtgacttaacacacgcacctcacaagctctgcgtgacttaagtcatgcaccactg 4759270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 5913248 - 5913181
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||||| | |||||||||||||  ||||||| | || |||||||||||||||||||| |||||    
T  5913248 agttaagtcacaccgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacacacca 5913181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 23542872 - 23542805
Alignment:
Q  178 taagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| ||||||||||||| |  | |||| ||||| ||||||||||||||| |||||||||||||    
T  23542872 taagtcacactgcgtgacttaaataacacaccgtataagctctgcgtgacttaattcacgcaccactg 23542805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 9039620 - 9039690
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||| ||||| ||||| |||||||  ||||||| | ||||| ||||||||||||||||| ||||||||    
T  9039620 agttaagccacgcagcgtgccttaactcacgcacctcacaacctttgcgtgacttaagtcacacaccactg 9039690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 42182615 - 42182685
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| |||||||||||||||  |||| || | || |||| |||||| |||||||||||||||||    
T  42182615 agttaagtcacactgcgtgacttaactcacgcatctcacaagctctacgtgacctaagtcacgcaccactg 42182685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 34471694 - 34471730
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| |||||||||||||||||||    
T  34471694 cgcaagttaagtcacgcagcgtgacttaacttgcgca 34471730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 5944125 - 5944159
Alignment:
Q  173 caagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||| |||||||||||||||||||||||||    
T  5944125 caagttaagacacgctgcgtgacttaacttgcgca 5944159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 20520418 - 20520480
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 233  Q
    ||||||||||||||||||| |||||||||| ||||||| ||    ||| ||||||||||||||    
T  20520418 cgcaagttaagtcacgctgtgtgacttaacatgcgcacgttgagtcctatgcgtgacttaagt 20520480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 20669835 - 20669802
Alignment:
Q  172 gcaagttaagtcacgctgcgtgacttaacttgcg 205  Q
    ||||||||||||||||||||||||||||| ||||    
T  20669835 gcaagttaagtcacgctgcgtgacttaacatgcg 20669802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 319161 - 319249
Alignment:
Q  157 caaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  319161 caaaaatgctcttgcgcaagttaagtcacgctgtgtaatttaacttgcgcaccttataacctctgtgtgacttaagtcatgcaccactg 319249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 13312541 - 13312611
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| |||||||    
T  13312541 agttaagtcacgctgcgtgacttaactaacgcaccttataagctctgcgtgacttaagtcacgaaccactg 13312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 23912378 - 23912312
Alignment:
Q  179 aagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| | |||||||||||  |||||||||||| ||||||||||||||||||| |||||||||    
T  23912378 aagtcacgccgtgtgacttaactcacgcaccttataagctctgcgtgacttaagtcatgcaccactg 23912312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 30634247 - 30634177
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || |||| ||||||||||||||||||||||||    
T  30634247 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactg 30634177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 7526809 - 7526846
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7526809 cgcaagttaagtcacgctgcgtgtcttaacttgcgcac 7526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 4362449 - 4362406
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttata 214  Q
    |||||||||||||||| |||||| |||||||||||||| |||||    
T  4362449 cgcaagttaagtcacgttgcgtgccttaacttgcgcacgttata 4362406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 245
Target Start/End: Original strand, 9521402 - 9521437
Alignment:
Q  210 ttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||| |||||||||||||||||||||||||||||    
T  9521402 ttataagctctgcgtgacttaagtcacgcaccactg 9521437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 3515348 - 3515280
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| | | |||||||||||  ||||| | | || || ||||||||||||||||||||||||||    
T  3515348 ttaagtcacacagtgtgacttaactcacgcacttcacaagctttgcgtgacttaagtcacgcaccactg 3515280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 7526843 - 7526807
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  7526843 cgcaagttaagacacgcagcgtgacttaacttgcgca 7526807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 11598974 - 11599042
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||| |||| | ||| |||||||||  ||||||| | || ||||||||||||||||||| |||||||    
T  11598974 agttaactcacaccgcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccac 11599042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 1173116 - 1172998
Alignment:
Q  128 gcacattttgctcgcac-ctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    |||||||| |||||| | ||||||  |||||||| |||| ||| ||  ||||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  1173116 gcacatttggctcgcgcactgcaggcatatcaaatatgcccttgcgttagttaagtcacgcagcgtgacttaacaagcgcaccttataacctctgcgtga 1173017  T
Q  227 cttaagtcacgcaccactg 245  Q
    ||||||| |||||||||||    
T  1173016 cttaagttacgcaccactg 1172998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 7084104 - 7084039
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcac 240  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  7084104 agttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcac 7084039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 1082020 - 1081950
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || |||||||||||||||||||||||||||||    
T  1082020 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 1081950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 6427238 - 6427308
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||  || ||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||    
T  6427238 agttaagtcttgcagcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcacaactg 6427308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 41758829 - 41758777
Alignment:
Q  190 cgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  41758829 cgtgacttaacttgcgcattttataacctctgcgtgacttgagtcacgcacca 41758777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 12144001 - 12144071
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || ||||||||||||||||||||||||||    
T  12144001 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 12144071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 11125916 - 11125847
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||  ||||||||||||  |||||||||| | ||||||||||||||||||| ||| |||||    
T  11125916 agttaagtcacgcaacgtgacttaactcacgcaccttat-agctctgcgtgacttaagtcatgcatcactg 11125847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 16100835 - 16100902
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    |||||||||| ||  |||| |||||||  ||||||||||||   ||||||||||||||||||||||||    
T  16100835 agttaagtcatgcgacgtggcttaactcacgcaccttataagtcctgcgtgacttaagtcacgcacca 16100902  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 19401898 - 19401933
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgc 206  Q
    |||||||||||||||||| |||||||||||||||||    
T  19401898 cgcaagttaagtcacgctacgtgacttaacttgcgc 19401933  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 2786687 - 2786757
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| |||  || |||||||||  ||||||| | || ||||||||||||||||||| |||||||||    
T  2786687 agttaagtcgcgcaacgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccactg 2786757  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 18172267 - 18172197
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| | || |||||||   ||||| | | || |||||||||||||||||||||||||||||    
T  18172267 agttaagtcacgcagtgtcacttaacacacgcacatcacaagctctgcgtgacttaagtcacgcaccactg 18172197  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 40034134 - 40034064
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||  ||||||||||||   |||||||| ||   ||||| |||||||||||||||||||||    
T  40034134 agttaagtcacgcatcgtgacttaactcatgcaccttacaattactgcgagacttaagtcacgcaccactg 40034064  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 43147542 - 43147488
Alignment:
Q  191 gtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||  |||| || | || |||||||||||||||||||||||||||||    
T  43147542 gtgacttaactaacgcatctcacaaactctgcgtgacttaagtcacgcaccactg 43147488  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 2740598 - 2740562
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  2740598 cgcaagttaagacacactgcgtgacttaacttgcgca 2740562  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 3461481 - 3461513
Alignment:
Q  170 acgcaagttaagtcacgctgcgtgacttaactt 202  Q
    ||||||||||||||||||| |||||||||||||    
T  3461481 acgcaagttaagtcacgctacgtgacttaactt 3461513  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 28784900 - 28784832
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||| |||||||||||||||||   | ||||||||||  | ||||||||||||||||| | ||||||    
T  28784900 ttaagttacgctgcgtgacttaacaaacacaccttataatttatgcgtgacttaagtcacaccccactg 28784832  T

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Target: scaffold0753 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 3956 - 4023
Alignment:
Q  178 taagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| ||||| ||| ||||  | || ||||||| |||||||||||||||||||||||||||||    
T  3956 taagtcacgatgcgtaactaaactcacacatcttataatctctgcgtgacttaagtcacgcaccactg 4023  T

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Target: scaffold0217 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 25553 - 25621
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||||||||||||||| |||| |  | |||||||||| || ||||||||||||| |||| |||||    
T  25553 agttaagtcacgctgcgtgatttaattcacacaccttataatctatgcgtgacttaaggcacgtaccac 25621  T

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Target: scaffold0051 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 20060 - 20118
Alignment:
Q  187 ctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| ||||||  ||||||| | || || ||||||||||||||||||||||||||    
T  20060 ctgcgtgagttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 20118  T

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Target: scaffold1212 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 1830 - 1801
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaac 200  Q
    ||||||||||||||||||||||||||||||    
T  1830 cgcaagttaagtcacgctgcgtgacttaac 1801  T

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