View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1958_high_11 (Length: 247)
Name: NF1958_high_11
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 56068404 - 56068630
Alignment:
| Q |
1 |
tgttttgagattgagaatatatatacatgatacaaattaattttggtgatgatttggaatacatttgaannnnnnnnctgcaaaagcaggaagtaagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
56068404 |
tgttttgagattgagaatatatatacatgatacaaattaattttggtgatgatttggaatacatttgaatttttttgctgcaaaagcaggaagtaagttt |
56068503 |
T |
|
| Q |
101 |
ggtaaaatcacggattttgttccgtagtttttgtcaaaattgtagtgactcaccatgattccgttaataaactttgggaaactcaacctacactttcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||||||| ||||||||||| |
|
|
| T |
56068504 |
ggtaaaatcacggattttgttccgtagtttttgtcaaaattgtagtgactcatcatgattcc---attaaactttggaaaactcaacccacactttcact |
56068600 |
T |
|
| Q |
201 |
tgaaagaacctaaataattgagtgactagt |
230 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
56068601 |
tgaaagaacctaaataattgagggactagt |
56068630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University