View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1958_high_6 (Length: 334)
Name: NF1958_high_6
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_high_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 10672956 - 10673273
Alignment:
| Q |
17 |
aagaagaccaagattcaagagctaattttgctcagaaaatatttaggtgtttcacttcttcgtgttctcggttctagacatgaataatcctaccattttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10672956 |
aagaagaccaagattcaagagctaattttgctcagaaaatatttaggtgtttcacttcttcgtgttctcggttctagacatgaataatcctaccattttc |
10673055 |
T |
|
| Q |
117 |
taggtgtagttataattacgctagccttcgaggaccagatgtatagcaactgtacaattacatttgaaacaaatgaatcttttgggtagcattgtaagct |
216 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10673056 |
taggtgtagatataattacgctagcctttgaggaccagatgtatagcaactgtacaattacatttgaaacaaatgaatcttttgggtagcattgtaagct |
10673155 |
T |
|
| Q |
217 |
caaggaccggagaaatatttgcatcaagtctgaggttcaattttggggcttaataaattttggactgccagaacacattttgaataagatgtttttagac |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10673156 |
caaggactggagaaatatttgcatcaagtctgaggttcaattttggagcttaataaattttggactgccagaacacattttgaataagatgtttttagac |
10673255 |
T |
|
| Q |
317 |
aaagtaagaataggacaa |
334 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10673256 |
aaagtaagaataggacaa |
10673273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University