View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_high_7 (Length: 323)
Name: NF1958_high_7
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_high_7 |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 130 - 313
Target Start/End: Original strand, 11313057 - 11313240
Alignment:
| Q |
130 |
cctgcacctgttaagcctcctgctccagtcacacctgcacctgtcaagcctcctgtctctattaaacctgctcctgtgaagcctactcctgttaagcctg |
229 |
Q |
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| T |
11313057 |
cctgcacctgttaagcctcctgctccagtcacgcctgcacctgtcaagcctcctgtctctattaaacctgctcctgttaagcctactcctgttaagcctg |
11313156 |
T |
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| Q |
230 |
gcccttttgtgcctaatccaatttctgtccatatccctgttatgcctatacctggtattactgtccctattacacctgcctttg |
313 |
Q |
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| T |
11313157 |
gcccttttgtgcctaatccaatttccgtccatatccctgttatgcctatacctggtattactgtccctattacacctgcctttg |
11313240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 11312999 - 11313046
Alignment:
| Q |
3 |
tacccctcctacccctgttaaacctcctgtccctgttacacctcctac |
50 |
Q |
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| T |
11312999 |
tacccctcctacccctgttaaacctcctgtccctgttaaacctcctac |
11313046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 11313030 - 11313071
Alignment:
| Q |
85 |
cctgttaaacctcccactcatgttacgcctgcacctgttaag |
126 |
Q |
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| T |
11313030 |
cctgttaaacctcctactcatgttacgcctgcacctgttaag |
11313071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11312871 - 11312919
Alignment:
| Q |
1 |
cgtacccctcctacccctgttaaacctcctgtccctgttacacctccta |
49 |
Q |
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| T |
11312871 |
cgtacccctcctacccctattaagcctcgtgtccctgttacccctccta |
11312919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11312961 - 11313013
Alignment:
| Q |
1 |
cgtacccctcctacccctgttaaacctcctgtccctgttacacctcctacccc |
53 |
Q |
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| T |
11312961 |
cgtacccctcctacccctattaagtctcgtgtccctgttacccctcctacccc |
11313013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 4185 - 4291
Alignment:
| Q |
202 |
cctgtgaagcctactcctgttaagcctggcccttttgtgcctaatccaatttctgtccatatccc---tgttatgcctatacctggtattactgtcccta |
298 |
Q |
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| T |
4185 |
cctgttaagcctgctcctgttaagcctagcccttttatgcctaatccaatttctattgatgtccctgttgttatgcctgtccctgttaatcctgtcccta |
4284 |
T |
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| Q |
299 |
ttacacc |
305 |
Q |
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| T |
4285 |
ttacacc |
4291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 21471869 - 21471922
Alignment:
| Q |
202 |
cctgtgaagcctactcctgttaagcctggcccttttgtgcctaatccaatttct |
255 |
Q |
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| T |
21471869 |
cctgttaagcctgctcctgttaagcctagcccttttacgcctaatccaatttct |
21471922 |
T |
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