View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_low_10 (Length: 295)
Name: NF1958_low_10
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 14983977 - 14984269
Alignment:
| Q |
1 |
ccttatctctttttacaagttagatttgtttgtttttctttcgccaat-----accagttatttctccaaataaaaaattattttccatgtgtgataaaa |
95 |
Q |
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| T |
14983977 |
ccttatctctttttacaagttagatttgtttgtttttctttcgccaatggagtaccagttatttctccaaataaaaaaatattttccgtgtgtgataaaa |
14984076 |
T |
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| Q |
96 |
ataatccttggaactttgtttaatttcttctaatcaaaattaactttgtgaggggatatgaatatgaggataatttggtggctgaagagtggaaataaaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14984077 |
ataatccttggaactttgtttaatttcttctaatcaaaattaactttgtgaggggatatgaatatgaggataatttggtggctggagagtggaaataaaa |
14984176 |
T |
|
| Q |
196 |
agtggagtgatacctttnnnnnnntaagaagtggagtgataaaaacatgttttagaaaaactttcaagacttgcgtaaattttcttcatctcac |
289 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14984177 |
agtggagtgatacctttaaaaaaataagaagtggagtgat-aaaacatgttttagaaaaactttcaagacttgcgtaaattttcttcatctcac |
14984269 |
T |
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