View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1958_low_12 (Length: 264)

Name: NF1958_low_12
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1958_low_12
NF1958_low_12
[»] chr2 (14 HSPs)
chr2 (13-245)||(29908306-29908527)
chr2 (144-239)||(8556161-8556256)
chr2 (175-245)||(6903777-6903847)
chr2 (182-244)||(37057161-37057223)
chr2 (144-245)||(12874166-12874267)
chr2 (175-243)||(29132699-29132767)
chr2 (175-245)||(4616700-4616770)
chr2 (175-245)||(16710265-16710335)
chr2 (175-245)||(32737934-32738004)
chr2 (175-245)||(41192445-41192515)
chr2 (176-245)||(5290762-5290831)
chr2 (175-245)||(5814597-5814668)
chr2 (171-214)||(11815517-11815560)
chr2 (171-207)||(29908451-29908487)
[»] chr4 (27 HSPs)
chr4 (125-243)||(38131342-38131461)
chr4 (146-244)||(27761193-27761291)
chr4 (128-245)||(49065613-49065731)
chr4 (128-242)||(21713230-21713345)
chr4 (144-240)||(31822963-31823059)
chr4 (175-245)||(9242981-9243051)
chr4 (175-245)||(37694574-37694644)
chr4 (175-245)||(42118929-42118999)
chr4 (175-245)||(2777929-2777999)
chr4 (175-245)||(14289664-14289734)
chr4 (171-233)||(21058683-21058745)
chr4 (175-245)||(24608216-24608286)
chr4 (175-245)||(43502347-43502417)
chr4 (175-245)||(54703592-54703662)
chr4 (175-245)||(49261847-49261918)
chr4 (173-207)||(26973372-26973406)
chr4 (170-208)||(32310356-32310394)
chr4 (171-233)||(42563153-42563215)
chr4 (175-245)||(52789350-52789420)
chr4 (171-208)||(850633-850670)
chr4 (175-236)||(8932529-8932589)
chr4 (179-244)||(13867846-13867910)
chr4 (171-208)||(39463078-39463115)
chr4 (171-207)||(21058711-21058747)
chr4 (175-239)||(33985517-33985581)
chr4 (171-207)||(38131387-38131423)
chr4 (171-207)||(48577410-48577446)
[»] chr7 (15 HSPs)
chr7 (125-245)||(27874087-27874208)
chr7 (128-242)||(39476435-39476550)
chr7 (146-245)||(41219437-41219536)
chr7 (175-245)||(8260834-8260904)
chr7 (158-239)||(18239475-18239556)
chr7 (175-245)||(39283944-39284014)
chr7 (175-245)||(29714254-29714323)
chr7 (204-245)||(37524219-37524260)
chr7 (175-245)||(4035214-4035284)
chr7 (175-236)||(3742437-3742498)
chr7 (171-207)||(38455066-38455102)
chr7 (204-245)||(14678288-14678329)
chr7 (204-245)||(34354451-34354492)
chr7 (171-208)||(38455068-38455105)
chr7 (171-207)||(27874127-27874163)
[»] chr3 (20 HSPs)
chr3 (144-245)||(48086766-48086867)
chr3 (129-240)||(2182556-2182668)
chr3 (125-245)||(39415249-39415370)
chr3 (126-245)||(25574731-25574851)
chr3 (128-245)||(49742161-49742279)
chr3 (128-245)||(23029554-23029672)
chr3 (175-245)||(6462950-6463020)
chr3 (175-245)||(6755777-6755847)
chr3 (128-245)||(41649853-41649971)
chr3 (175-245)||(49501594-49501664)
chr3 (175-236)||(47560448-47560509)
chr3 (169-245)||(14995134-14995210)
chr3 (203-245)||(37282182-37282224)
chr3 (175-234)||(53401547-53401606)
chr3 (175-245)||(7956323-7956393)
chr3 (171-208)||(29523212-29523249)
chr3 (171-207)||(2182591-2182627)
chr3 (175-207)||(23029596-23029628)
chr3 (171-207)||(48086791-48086827)
chr3 (175-207)||(49742205-49742237)
[»] chr1 (22 HSPs)
chr1 (127-245)||(41871638-41871757)
chr1 (128-242)||(39222609-39222724)
chr1 (128-242)||(46923684-46923799)
chr1 (158-239)||(48566695-48566776)
chr1 (175-245)||(5770624-5770694)
chr1 (175-242)||(3660242-3660309)
chr1 (177-244)||(21482862-21482929)
chr1 (175-245)||(5766885-5766955)
chr1 (175-245)||(33686606-33686676)
chr1 (128-242)||(30308285-30308398)
chr1 (175-245)||(10308428-10308498)
chr1 (175-244)||(7014837-7014906)
chr1 (175-235)||(30858451-30858511)
chr1 (177-245)||(47983638-47983706)
chr1 (201-245)||(49597173-49597217)
chr1 (175-242)||(22605393-22605460)
chr1 (175-245)||(12926782-12926852)
chr1 (175-240)||(23603024-23603090)
chr1 (176-241)||(20447122-20447186)
chr1 (176-241)||(20532885-20532949)
chr1 (175-207)||(39222651-39222683)
chr1 (171-207)||(41871681-41871717)
[»] chr8 (13 HSPs)
chr8 (130-242)||(34471657-34471770)
chr8 (128-242)||(43693630-43693745)
chr8 (175-245)||(15743251-15743321)
chr8 (175-243)||(1217746-1217814)
chr8 (174-245)||(4759270-4759341)
chr8 (175-242)||(5913181-5913248)
chr8 (178-245)||(23542805-23542872)
chr8 (175-245)||(9039620-9039690)
chr8 (175-245)||(42182615-42182685)
chr8 (171-207)||(34471694-34471730)
chr8 (173-207)||(5944125-5944159)
chr8 (171-233)||(20520418-20520480)
chr8 (172-205)||(20669802-20669835)
[»] chr6 (10 HSPs)
chr6 (157-245)||(319161-319249)
chr6 (175-245)||(13312541-13312611)
chr6 (179-245)||(23912312-23912378)
chr6 (175-245)||(30634177-30634247)
chr6 (171-208)||(7526809-7526846)
chr6 (171-214)||(4362406-4362449)
chr6 (210-245)||(9521402-9521437)
chr6 (177-245)||(3515280-3515348)
chr6 (171-207)||(7526807-7526843)
chr6 (175-243)||(11598974-11599042)
[»] chr5 (16 HSPs)
chr5 (128-245)||(1172998-1173116)
chr5 (175-240)||(7084039-7084104)
chr5 (175-245)||(1081950-1082020)
chr5 (175-245)||(6427238-6427308)
chr5 (190-242)||(41758777-41758829)
chr5 (175-245)||(12144001-12144071)
chr5 (175-245)||(11125847-11125916)
chr5 (175-242)||(16100835-16100902)
chr5 (171-206)||(19401898-19401933)
chr5 (175-245)||(2786687-2786757)
chr5 (175-245)||(18172197-18172267)
chr5 (175-245)||(40034064-40034134)
chr5 (191-245)||(43147488-43147542)
chr5 (171-207)||(2740562-2740598)
chr5 (170-202)||(3461481-3461513)
chr5 (177-245)||(28784832-28784900)
[»] scaffold0753 (1 HSPs)
scaffold0753 (178-245)||(3956-4023)
[»] scaffold0217 (1 HSPs)
scaffold0217 (175-243)||(25553-25621)
[»] scaffold0051 (1 HSPs)
scaffold0051 (187-245)||(20060-20118)
[»] scaffold1212 (1 HSPs)
scaffold1212 (171-200)||(1801-1830)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 29908306 - 29908527
Alignment:
Q  13 attctcaaggtggatggctgtcaaaatagattgggcctgcccaatggggccaactagaccgacctagggactc-tgttgaaatagaatcctgctctttat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||    
T  29908306 attctcaaggtggatggctgtcaaaatagattgggcctgcccaatggggccaactagaccgacctagggactcttgttgaaatagaatgttgctcttcat 29908405  T
Q  112 catgcacattttgccagcacattttgctcgc-acctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcacct 210  Q
                 ||||||||||||||||||  |||||||||||  ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  29908406 -------------ccagcacattttgctcgcgccctgcagctatgccaaaaatgcccttgcgcaagttaagttacgctgcgtgacttaacttgcgcacct 29908492  T
Q  211 tataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||| ||||||    
T  29908493 tataacctctgcgtgacttaagtcacgcgccactg 29908527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 8556161 - 8556256
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    |||||||| ||  ||||||||||||| ||| |||||||||||||  |||||||||||| ||||||||||||| || || |||||||||||||||||    
T  8556161 cctgcagccatgccaaaaatgctcttgcgctagttaagtcacgcaacgtgacttaactggcgcaccttataatctatgtgtgacttaagtcacgca 8556256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 6903847 - 6903777
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||   ||||| ||||| || |||||| |||||||||||||||||||    
T  6903847 agttaagtcacgctgcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgcaccactg 6903777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 37057161 - 37057223
Alignment:
Q  182 tcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    ||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||||||    
T  37057161 tcacgctgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccact 37057223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 12874166 - 12874267
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||| | ||| |||| |||||||| ||  |||||||||| ||  |||||||||||  |||| |||||||| |||| ||||||||||||||||||||||    
T  12874166 cctgcaaccataccaaatatgctcttgcgttagttaagtcatgcaacgtgacttaaccagcgcgccttataatctctacgtgacttaagtcacgcaccac 12874265  T
Q  244 tg 245  Q
    ||    
T  12874266 tg 12874267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 29132767 - 29132699
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||||||||  ||||||||||||  ||||||||||||  ||| ||||||||||||||||||||||    
T  29132767 agttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgacttaagtcacgcaccac 29132699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 4616770 - 4616700
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||||| |||||||||||  ||||| | | || |||||||||||||||||||||| ||||||    
T  4616770 agttaagtcacgctgtgtgacttaactcacgcacttcacaagctctgcgtgacttaagtcacgccccactg 4616700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 16710335 - 16710265
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || ||||||||||  |||| ||||||   ||||||||| ||||||||||||||||||    
T  16710335 agttaagtcacgcagcatgacttaactaacgcatcttatatgttctgcgtgagttaagtcacgcaccactg 16710265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 32738004 - 32737934
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| | |||||||||||    ||||||||||||  | ||||||||||||||||||||||||||    
T  32738004 agttaagtcacacagcgtgacttaataaacgcaccttataagttgtgcgtgacttaagtcacgcaccactg 32737934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 41192515 - 41192445
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || ||||| |||||||||||||| ||||||||    
T  41192515 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgtgtgacttaagtcacacaccactg 41192445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 5290831 - 5290762
Alignment:
Q  176 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||| |||||||||||   | ||||   || |||||||||||||||||||||||||||||    
T  5290831 gttaagtcacgctgtgtgacttaactcatgtacctctcaagctctgcgtgacttaagtcacgcaccactg 5290762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5814668 - 5814597
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgac-ttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || ||||||||||| ||||||||||||| ||||    
T  5814668 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgactttaagtcacgcactactg 5814597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 11815517 - 11815560
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttata 214  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  11815517 cgcaagttaagacacgctgcgtgtcttaacttgcgcacgttata 11815560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 29908487 - 29908451
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  29908487 cgcaagttaagtcacgcagcgtaacttaacttgcgca 29908451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 38131342 - 38131461
Alignment:
Q  125 ccagcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 223  Q
    |||||||||||||||||| || |||||| ||  ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |    
T  38131342 ccagcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttctaacctctgtg 38131441  T
Q  224 tgacttaagtcacgcaccac 243  Q
    ||||||||||||||||||||    
T  38131442 tgacttaagtcacgcaccac 38131461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 27761291 - 27761193
Alignment:
Q  146 tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    |||||| || |||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  27761291 tgcagccatgtcaaaaatgcccttgcgcaagttaagtcacgctgcgtgatttaatttgcgcaccttataatctctgcgtgacttaagtcacgcaccact 27761193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 49065731 - 49065613
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| |||||||||||| |||||||||||||| ||||||||||||| || |||||||    
T  49065731 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgttgcgtgacttaactagcgcaccttataaactatgcgtga 49065632  T
Q  227 cttaagtcacgcaccactg 245  Q
    |||||||||||||||||||    
T  49065631 cttaagtcacgcaccactg 49065613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 21713345 - 21713230
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||||||||||| |||||| |||||| ||||||||||||| || ||||||     
T  21713345 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgatttaactagcgcaccttataatctatgcgtgg 21713246  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  21713245 cttaagtcacgcacca 21713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 31822963 - 31823059
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcac 240  Q
    |||||||| ||  ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||| ||||||||    
T  31822963 cctgcagccatgccaaaaatgcccttgcgcaagttaagccacgctgtgtgacttaacttgcgcaccttataagctttgcgtgagttaactcacgcac 31823059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 9243051 - 9242981
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| || ||||||||||||  | |||||||||| |||||||||||||||||||||||||||||    
T  9243051 agttaagtcacactacgtgacttaactcacacaccttataatctctgcgtgacttaagtcacgcaccactg 9242981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 37694644 - 37694574
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| |||||||||||||  ||||||| | || |||||| ||||||||||||||||||||||    
T  37694644 agttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcatgacttaagtcacgcaccactg 37694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 42118929 - 42118999
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  | ||||| | ||  ||||||||||||||||||||||||||||    
T  42118929 agttaagtcacgctgcgtgacttaactcacacacctcacaagttctgcgtgacttaagtcacgcaccactg 42118999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 2777929 - 2777999
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| |||||||||||||  ||||||||||||  ||||||| ||||||||||| | ||||||    
T  2777929 agttaagtcacgcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcacacgccactg 2777999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 14289664 - 14289734
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| | | ||||||||||| |||||||||||||  | || |||||||||||||| ||||||||    
T  14289664 agttaagtcacacagtgtgacttaactagcgcaccttataatatatgtgtgacttaagtcacacaccactg 14289734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 21058745 - 21058683
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 233  Q
    |||||||||||||||||||||||||||||| ||||||| ||    ||| ||||||||||||||    
T  21058745 cgcaagttaagtcacgctgcgtgacttaacatgcgcacgttgagtcctatgcgtgacttaagt 21058683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 24608286 - 24608216
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| |||| ||| ||||||||| ||||||||||||| || || |||| |||||||||||| |||||    
T  24608286 agttaagttacgcagcgagacttaactagcgcaccttataatctttgtgtgagttaagtcacgcatcactg 24608216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 43502417 - 43502347
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| |||| ||| || ||||| ||||||||| | || |||||||||||||||||| ||||||||||    
T  43502417 agttaagtaacgcagcgagatttaacatgcgcacctcacaagctctgcgtgacttaagtcgcgcaccactg 43502347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 54703592 - 54703662
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| |||| ||| |||||||| | ||||||| | || |||||||||||||||||| ||||||||||    
T  54703592 agttaagtaacgcagcgagacttaacatacgcacctcacaagctctgcgtgacttaagtcgcgcaccactg 54703662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 49261918 - 49261847
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || ||||||||||  ||||||| ||| |  || |||||||||||||||||||||||||    
T  49261918 agttaagtcacgcagcatgacttaactcacgcacctaatagagttcagcgtgacttaagtcacgcaccactg 49261847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 26973372 - 26973406
Alignment:
Q  173 caagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||||||||||||||||||||||||||||| ||||    
T  26973372 caagttaagtcacgctgcgtgacttaacttacgca 26973406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 32310394 - 32310356
Alignment:
Q  170 acgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  32310394 acgcaagtaaagtcacgctgcgtgtcttaacttgcgcac 32310356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 42563215 - 42563153
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 233  Q
    |||||||||||||||||||||||| ||||| ||||||  || || | | ||||||||||||||    
T  42563215 cgcaagttaagtcacgctgcgtgatttaacctgcgcatgttgtatcttatgcgtgacttaagt 42563153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 52789350 - 52789420
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||| |  |||| |||||||   ||||||| | || |||||||||||||||||||||||||||||    
T  52789350 agttaagtcaagtagcgtcacttaacacacgcacctcacaaactctgcgtgacttaagtcacgcaccactg 52789420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 850670 - 850633
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  850670 cgcaagttaagtcatgctgcgtgtcttaacttgcgcac 850633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 8932529 - 8932589
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 236  Q
    ||||||||||| | | |||||||||||  |||||||||| | ||||||||||||||||||||    
T  8932529 agttaagtcacacagtgtgacttaactcacgcaccttat-agctctgcgtgacttaagtcac 8932589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 13867910 - 13867846
Alignment:
Q  179 aagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    |||||||||||||||||||||||   |||||| || | ||| || |||||||||||||||||||||    
T  13867910 aagtcacgctgcgtgacttaactcatgcacctaat-agctcagcatgacttaagtcacgcaccact 13867846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 39463078 - 39463115
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  39463078 cgcaagttaagttacgctgcgtgacttaacatgcgcac 39463115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 21058711 - 21058747
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||| |||||||||||| |||||||||||||||||||    
T  21058711 cgcatgttaagtcacgcagcgtgacttaacttgcgca 21058747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 33985581 - 33985517
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    |||||||||||||  ||||  ||||||  ||||||| | || |||||||||||||||||||||||    
T  33985581 agttaagtcacgcaacgtggtttaactcacgcacctcacaaactctgcgtgacttaagtcacgca 33985517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 38131423 - 38131387
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||||||||||||| || |||||||||||||||||||    
T  38131423 cgcaagttaagtcatgcagcgtgacttaacttgcgca 38131387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 48577410 - 48577446
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  48577410 cgcaagttaagacacgttgcgtgacttaacttgcgca 48577446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 27874208 - 27874087
Alignment:
Q  125 ccagcacattttgctcgca-cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 223  Q
    ||||||||||||||||||  |||||||| ||  ||||||||  ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  27874208 ccagcacattttgctcgcgtcctgcagccatgccaaaaatgtccttgcgcaagttaagtcacgctgcgtggcttaacttgcgcaccatataacctctgcg 27874109  T
Q  224 tgacttaagtcacgcaccactg 245  Q
    ||||||||| ||||||||||||    
T  27874108 tgacttaagccacgcaccactg 27874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 39476435 - 39476550
Alignment:
Q  128 gcacattttgctcgcacct-gcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| ||| ||||| || | |||||||| ||||||  |||||||||| || ||||||||||||| ||||||||||||| || |||||||    
T  39476435 gcacattttgctcgcgccttgcagccatgttaaaaatgcccttacgttagttaagtcatgcagcgtgacttaactagcgcaccttataatctatgcgtga 39476534  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  39476535 cttaagtcacgcacca 39476550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 41219536 - 41219437
Alignment:
Q  146 tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||| || |||||||||   || |||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  41219536 tgcagccatgtcaaaaatgtcattgcgcaagttaagttacactgcgtgatttaacttgcgcatcttataacctctgcgtgacttaagtcacgcatcactg 41219437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 8260834 - 8260904
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  8260834 agttaagtcacgctgcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgcaccactg 8260904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 18239556 - 18239475
Alignment:
Q  158 aaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||    
T  18239556 aaaaatgcccttgcacaagttaagtcacgctgcgtgacttaacttgtacaccttataacatctgtgtgacttaagtcacgca 18239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 39283944 - 39284014
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||||| |||||||  ||||||| |||| |||||||||||||||||||||||||||||    
T  39283944 agttaagtcacgcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgcaccactg 39284014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 29714254 - 29714323
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||||||||||||||| |  |||||||||| | ||||||||||||||||||| |||||||||    
T  29714254 agttaagtcacgctgcgtgacttaaatcacgcaccttat-agctctgcgtgacttaagtcatgcaccactg 29714323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 37524260 - 37524219
Alignment:
Q  204 cgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  37524260 cgcaccttataagctctgcgtgacttaagtcacgcaccactg 37524219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 4035284 - 4035214
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||   |||||| | || | |||||||||||||||||||||||||||    
T  4035284 agttaagtcacgcagcgagacttaactcatgcacctcacaatccctgcgtgacttaagtcacgcaccactg 4035214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 3742498 - 3742437
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 236  Q
    |||||||||| || |||||| |||||| |||||| |||||| ||||| ||||||||||||||    
T  3742498 agttaagtcatgcagcgtgatttaactagcgcactttataatctctgtgtgacttaagtcac 3742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 38455102 - 38455066
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38455102 cgcaagttaagacacgctgcgtgacttaacttgcgca 38455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 14678288 - 14678329
Alignment:
Q  204 cgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  14678288 cgcacctcacaacctctacgtgacttaagtcacgcaccactg 14678329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 34354492 - 34354451
Alignment:
Q  204 cgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  34354492 cgcaccttatatgctctgcgtgacttaagtcacgtaccactg 34354451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 38455068 - 38455105
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  38455068 cgcaagttaagtcacgcagcgtgtcttaacttgcgcac 38455105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 27874127 - 27874163
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  27874127 cgcaagttaagccacgcagcgtgacttaacttgcgca 27874163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 48086766 - 48086867
Alignment:
Q  144 cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||| || |||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48086766 cctgcagccatgtcaaaaatacccttgcgcaagttaagtcacactgcgtgacttaacttgcgcaccttataacctctgcatgacttaagtcacgcaccac 48086865  T
Q  244 tg 245  Q
    ||    
T  48086866 tg 48086867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 2182668 - 2182556
Alignment:
Q  129 cacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgac 227  Q
    ||||||||||||||||| |||||| || | |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  2182668 cacattttgctcgcaccatgcagccatgttaaaaatgcccttgcgtaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcttgat 2182569  T
Q  228 ttaagtcacgcac 240  Q
    |||||||||||||    
T  2182568 ttaagtcacgcac 2182556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 39415249 - 39415370
Alignment:
Q  125 ccagcacattttgctcgca-cctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 223  Q
    |||| |||||||||||||  |||||| | ||  ||||||||  ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39415249 ccagtacattttgctcgcgtcctgcaaccatgccaaaaatggccttgcacaaattaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcg 39415348  T
Q  224 tgacttaagtcacgcaccactg 245  Q
    ||||||||||||||||||||||    
T  39415349 tgacttaagtcacgcaccactg 39415370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 25574731 - 25574851
Alignment:
Q  126 cagcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgt 224  Q
    |||||||||||| |||| || |||||| || |||||||||| ||| |||||||||||||| || ||||||||||||||| ||||||| ||||||||| ||    
T  25574731 cagcacattttggtcgcgccctgcagccatgtcaaaaatgcccttgcgcaagttaagtcatgccgcgtgacttaacttgtgcaccttgtaacctctgtgt 25574830  T
Q  225 gacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||    
T  25574831 gacttaagtcacgcaccactg 25574851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 49742279 - 49742161
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||| |||||||| |||||| ||  ||||||||  ||| ||| ||||||||||||| |||||||||||||  ||||||| | || ||||||||||    
T  49742279 gcacattttactcgcaccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtga 49742180  T
Q  227 cttaagtcacgcaccactg 245  Q
    |||||||||||||||||||    
T  49742179 cttaagtcacgcaccactg 49742161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 23029554 - 23029672
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||||||||||| |||||||||||||  |||| || |||| || |||||||    
T  23029554 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtga 23029653  T
Q  227 cttaagtcacgcaccactg 245  Q
    ||||||||| |||||||||    
T  23029654 cttaagtcatgcaccactg 23029672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 6462950 - 6463020
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||| ||||||||||||||  |||||||||||| || || |||||||||||||||||||||||    
T  6462950 agttaagtcacgttgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgcaccactg 6463020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 6755847 - 6755777
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  |||||||||||| || || |||||||||||||| ||||||||    
T  6755847 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacacaccactg 6755777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 41649853 - 41649971
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| || |||||||||||||| || || ||||||||||| ||| || ||||||  | ||||| | || ||||| ||||    
T  41649853 gcacattttgctcgcgccctgcagccatgtcaaaaatgctcttgcgtaaattaagtcacgcagcgagatttaactcacacacctcacaagctctgtgtga 41649952  T
Q  227 cttaagtcacgcaccactg 245  Q
    |||||||||||||| ||||    
T  41649953 cttaagtcacgcactactg 41649971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 49501664 - 49501594
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| | ||| |||||||||  ||||||| | || |||||||||||||||||||||||||||||    
T  49501664 agttaagtcacacagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 49501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 47560509 - 47560448
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcac 236  Q
    ||||||||||||| |||||||||||||  | ||||||||||  |||||||||||||||||||    
T  47560509 agttaagtcacgccgcgtgacttaactcacacaccttataagttctgcgtgacttaagtcac 47560448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 14995134 - 14995210
Alignment:
Q  169 tacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||| ||||||||||||| |||||||||||||  | |||||||||| || || |||| ||||||||| ||||||||    
T  14995134 tacgctagttaagtcacgcagcgtgacttaactaacacaccttataatctttgtgtgagttaagtcacacaccactg 14995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 37282224 - 37282182
Alignment:
Q  203 gcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  37282224 gcgcaccttataagctttgcgtgacttaagtcacgcaccactg 37282182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 53401606 - 53401547
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtc 234  Q
    |||||||| |||| ||| |||||||||  ||||||| |||| ||||||||||||||||||    
T  53401606 agttaagttacgcagcgagacttaactcacgcacctcataagctctgcgtgacttaagtc 53401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 7956393 - 7956323
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| || |||||||||| ||||||||||||   | ||||||| ||||| ||| ||||||||    
T  7956393 agttaagtcacgcagcatgacttaactagcgcaccttatatggtgtgcgtgagttaagacacacaccactg 7956323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 29523249 - 29523212
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29523249 cgcaagttaagtcacgctgcatgtcttaacttgcgcac 29523212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 2182591 - 2182627
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  2182591 cgcaagttaagtcacgcagcgtgacttaacttacgca 2182627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 23029628 - 23029596
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||||||||||||| |||||    
T  23029628 agttaagtcacgctgcgtgacttaactagcgca 23029596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 48086827 - 48086791
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| | |||||||||||||||||    
T  48086827 cgcaagttaagtcacgcagtgtgacttaacttgcgca 48086791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 49742205 - 49742237
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||||||||||||| |||||    
T  49742205 agttaagtcacgctgcgtgacttaactagcgca 49742237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 41871638 - 41871757
Alignment:
Q  127 agcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtg 225  Q
    |||||||||||||||| || | |||| ||  ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  41871638 agcacattttgctcgcgccctacagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttataacctctgtgtg 41871737  T
Q  226 acttaagtcacgcaccactg 245  Q
    |||||||| |||||||||||    
T  41871738 acttaagtaacgcaccactg 41871757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 39222609 - 39222724
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||  ||| ||| ||||||||||||| ||||||||||||| |||| |||||||| || |||||||    
T  39222609 gcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactagcgcgccttataatctatgcgtga 39222708  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  39222709 cttaagtcacgcacca 39222724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 46923684 - 46923799
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||| ||| ||||| |||||||  |||||||||||| ||||||||||||| || |||||||    
T  46923684 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttacgtcacgcaacgtgacttaactagcgcaccttataatctatgcgtga 46923783  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  46923784 cttaagtcacgcacca 46923799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 48566695 - 48566776
Alignment:
Q  158 aaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgca 239  Q
    ||||||| |||| || ||||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  48566695 aaaaatgttcttgcgtaagttaagtcacgttgcgtgacttaacttgcagaccttataacctttgcgtgacttaagtcacgca 48566776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5770694 - 5770624
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  |||||||||||| || |||||| |||||||||||||||||||    
T  5770694 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgcgtggcttaagtcacgcaccactg 5770624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 3660309 - 3660242
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||| | | ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  3660309 agttaagtcgcacagcgtgacttaactagcgcaccttataagctctgcgtgacttaagtcacgcacca 3660242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 21482862 - 21482929
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    ||||||||||| |||||||||||||  | |||||||||| ||||||||||||||||||||||||||||    
T  21482862 ttaagtcacgcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgcaccact 21482929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5766955 - 5766885
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||| || |||||||  | |||||||||| || |||||| |||||||||||||||||||    
T  5766955 agttaagtcacgctgcatggcttaactcacacaccttataagctttgcgtggcttaagtcacgcaccactg 5766885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 33686676 - 33686606
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || ||||||||||||||||||||||||||    
T  33686676 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 33686606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 30308285 - 30308398
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  |||||||| | || ||  ||||||||||||| ||||||||||||  | |||||||||||| | |  ||||    
T  30308285 gcacattttgctcgcgccctgcagccatgccaaaaatgtttttgcgttagttaagtcacgcagcgtgacttaaccagtgcaccttataacttat--gtga 30308382  T
Q  227 cttaagtcacgcacca 242  Q
    ||||||||||||||||    
T  30308383 cttaagtcacgcacca 30308398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 10308428 - 10308498
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || || |||||||||||||||||||||||    
T  10308428 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccactg 10308498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 7014906 - 7014837
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccact 244  Q
    ||||||||||| | ||| |||||||||  ||||||| | || |||| |||||||||||||||||||||||    
T  7014906 agttaagtcacacagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccact 7014837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 30858451 - 30858511
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtca 235  Q
    |||||||||| || |||||||||||||  ||||||||| || ||||| |||||||||||||    
T  30858451 agttaagtcatgcagcgtgacttaactcacgcaccttacaagctctgtgtgacttaagtca 30858511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 47983638 - 47983706
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| |||||||||||||  |||||||||||   ||||||||| |||||||||  |||||||    
T  47983638 ttaagtcacgcagcgtgacttaactaacgcaccttatatgttctgcgtgagttaagtcacttaccactg 47983706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 49597173 - 49597217
Alignment:
Q  201 ttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||| |||||||| || |||||||||||||||||||||||||    
T  49597173 ttgcgcatcttataacttcagcgtgacttaagtcacgcaccactg 49597217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 22605393 - 22605460
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||| ||| ||||||||||| |  ||||||| | || |||| |||||||||||||||||||||    
T  22605393 agttaagtcgcgcagcgtgacttaagtcacgcacctcacaagctctacgtgacttaagtcacgcacca 22605460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 12926782 - 12926852
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||   |||||| | || ||||||| ||||||||||| |||||||||    
T  12926782 agttaagtcacgcagcgagacttaactcatgcacctcacaagctctgcgcgacttaagtcatgcaccactg 12926852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 23603090 - 23603024
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttata-acctctgcgtgacttaagtcacgcac 240  Q
    |||||||||||| |||||||||||||| | ||| || ||| | ||| ||||||||||||||||||||    
T  23603090 agttaagtcacgttgcgtgacttaactcgtgcatctaatatatctcagcgtgacttaagtcacgcac 23603024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 20447122 - 20447186
Alignment:
Q  176 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacc 241  Q
    ||||||||||||||||||||||||||  | ||| |||| | || |||||||||||||| |||||||    
T  20447122 gttaagtcacgctgcgtgacttaactcacacacgttat-agctttgcgtgacttaagttacgcacc 20447186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 20532885 - 20532949
Alignment:
Q  176 gttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacc 241  Q
    ||||||||||||||||||||||||||  | ||| |||| | || |||||||||||||| |||||||    
T  20532885 gttaagtcacgctgcgtgacttaactcacacacgttat-agctttgcgtgacttaagttacgcacc 20532949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 39222683 - 39222651
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||||||||||||| |||||    
T  39222683 agttaagtcacgctgcgtgacttaactagcgca 39222651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 41871717 - 41871681
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    |||||||||||||| || |||||||||||||||||||    
T  41871717 cgcaagttaagtcatgcagcgtgacttaacttgcgca 41871681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 34471770 - 34471657
Alignment:
Q  130 acattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgact 228  Q
    ||||||||||||| || |||||| || |||||||||   || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  34471770 acattttgctcgcgccctgcagccatgtcaaaaatgtctttgcgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataaactatgcgtgact 34471671  T
Q  229 taagtcacgcacca 242  Q
    ||||||||||||||    
T  34471670 taagtcacgcacca 34471657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 43693745 - 43693630
Alignment:
Q  128 gcacattttgctcgcacc-tgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    ||||||||||||||| || |||||| ||  ||||||||  ||| ||| ||||| ||||||| ||||||||||||| ||||||||||||| || || ||||    
T  43693745 gcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaggtcacgcagcgtgacttaactagcgcaccttataatctatgtgtga 43693646  T
Q  227 cttaagtcacgcacca 242  Q
    ||||| ||||||||||    
T  43693645 cttaattcacgcacca 43693630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 15743321 - 15743251
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||  |||||||||  ||||||| | || |||||||||||||||||||||||||||||    
T  15743321 agttaagtcacgcagcaagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 15743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 1217746 - 1217814
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||||||| ||||||||||||||  ||||||| | || || || |||||||||||||||||||||    
T  1217746 agttaagtcacgttgcgtgacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccac 1217814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 4759341 - 4759270
Alignment:
Q  174 aagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||||  |||||||||||   ||||||| | || ||||||||||||||||||| |||||||||    
T  4759341 aagttaagtcacgcaacgtgacttaacacacgcacctcacaagctctgcgtgacttaagtcatgcaccactg 4759270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 5913248 - 5913181
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||||| | |||||||||||||  ||||||| | || |||||||||||||||||||| |||||    
T  5913248 agttaagtcacaccgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacacacca 5913181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 23542872 - 23542805
Alignment:
Q  178 taagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| ||||||||||||| |  | |||| ||||| ||||||||||||||| |||||||||||||    
T  23542872 taagtcacactgcgtgacttaaataacacaccgtataagctctgcgtgacttaattcacgcaccactg 23542805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 9039620 - 9039690
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||| ||||| ||||| |||||||  ||||||| | ||||| ||||||||||||||||| ||||||||    
T  9039620 agttaagccacgcagcgtgccttaactcacgcacctcacaacctttgcgtgacttaagtcacacaccactg 9039690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 42182615 - 42182685
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||| |||||||||||||||  |||| || | || |||| |||||| |||||||||||||||||    
T  42182615 agttaagtcacactgcgtgacttaactcacgcatctcacaagctctacgtgacctaagtcacgcaccactg 42182685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 34471694 - 34471730
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||||||||| |||||||||||||||||||    
T  34471694 cgcaagttaagtcacgcagcgtgacttaacttgcgca 34471730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 5944125 - 5944159
Alignment:
Q  173 caagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||| |||||||||||||||||||||||||    
T  5944125 caagttaagacacgctgcgtgacttaacttgcgca 5944159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 20520418 - 20520480
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagt 233  Q
    ||||||||||||||||||| |||||||||| ||||||| ||    ||| ||||||||||||||    
T  20520418 cgcaagttaagtcacgctgtgtgacttaacatgcgcacgttgagtcctatgcgtgacttaagt 20520480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 20669835 - 20669802
Alignment:
Q  172 gcaagttaagtcacgctgcgtgacttaacttgcg 205  Q
    ||||||||||||||||||||||||||||| ||||    
T  20669835 gcaagttaagtcacgctgcgtgacttaacatgcg 20669802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 319161 - 319249
Alignment:
Q  157 caaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  319161 caaaaatgctcttgcgcaagttaagtcacgctgtgtaatttaacttgcgcaccttataacctctgtgtgacttaagtcatgcaccactg 319249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 13312541 - 13312611
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| |||||||    
T  13312541 agttaagtcacgctgcgtgacttaactaacgcaccttataagctctgcgtgacttaagtcacgaaccactg 13312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 23912378 - 23912312
Alignment:
Q  179 aagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| | |||||||||||  |||||||||||| ||||||||||||||||||| |||||||||    
T  23912378 aagtcacgccgtgtgacttaactcacgcaccttataagctctgcgtgacttaagtcatgcaccactg 23912312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 30634247 - 30634177
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || |||| ||||||||||||||||||||||||    
T  30634247 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactg 30634177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 7526809 - 7526846
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcac 208  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7526809 cgcaagttaagtcacgctgcgtgtcttaacttgcgcac 7526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 4362449 - 4362406
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgcaccttata 214  Q
    |||||||||||||||| |||||| |||||||||||||| |||||    
T  4362449 cgcaagttaagtcacgttgcgtgccttaacttgcgcacgttata 4362406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 245
Target Start/End: Original strand, 9521402 - 9521437
Alignment:
Q  210 ttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||| |||||||||||||||||||||||||||||    
T  9521402 ttataagctctgcgtgacttaagtcacgcaccactg 9521437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 3515348 - 3515280
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| | | |||||||||||  ||||| | | || || ||||||||||||||||||||||||||    
T  3515348 ttaagtcacacagtgtgacttaactcacgcacttcacaagctttgcgtgacttaagtcacgcaccactg 3515280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 7526843 - 7526807
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  7526843 cgcaagttaagacacgcagcgtgacttaacttgcgca 7526807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 11598974 - 11599042
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||| |||| | ||| |||||||||  ||||||| | || ||||||||||||||||||| |||||||    
T  11598974 agttaactcacaccgcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccac 11599042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 1173116 - 1172998
Alignment:
Q  128 gcacattttgctcgcac-ctgcagctatatcaaaaatgctcttacgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 226  Q
    |||||||| |||||| | ||||||  |||||||| |||| ||| ||  ||||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  1173116 gcacatttggctcgcgcactgcaggcatatcaaatatgcccttgcgttagttaagtcacgcagcgtgacttaacaagcgcaccttataacctctgcgtga 1173017  T
Q  227 cttaagtcacgcaccactg 245  Q
    ||||||| |||||||||||    
T  1173016 cttaagttacgcaccactg 1172998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 7084104 - 7084039
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcac 240  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  7084104 agttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcac 7084039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 1082020 - 1081950
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || |||||||||||||||||||||||||||||    
T  1082020 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 1081950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 6427238 - 6427308
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||  || ||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||    
T  6427238 agttaagtcttgcagcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcacaactg 6427308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 41758829 - 41758777
Alignment:
Q  190 cgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  41758829 cgtgacttaacttgcgcattttataacctctgcgtgacttgagtcacgcacca 41758777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 12144001 - 12144071
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| ||| |||||||||  ||||||| | || || ||||||||||||||||||||||||||    
T  12144001 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 12144071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 11125916 - 11125847
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||  ||||||||||||  |||||||||| | ||||||||||||||||||| ||| |||||    
T  11125916 agttaagtcacgcaacgtgacttaactcacgcaccttat-agctctgcgtgacttaagtcatgcatcactg 11125847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 16100835 - 16100902
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcacca 242  Q
    |||||||||| ||  |||| |||||||  ||||||||||||   ||||||||||||||||||||||||    
T  16100835 agttaagtcatgcgacgtggcttaactcacgcaccttataagtcctgcgtgacttaagtcacgcacca 16100902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 19401898 - 19401933
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgc 206  Q
    |||||||||||||||||| |||||||||||||||||    
T  19401898 cgcaagttaagtcacgctacgtgacttaacttgcgc 19401933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 2786687 - 2786757
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| |||  || |||||||||  ||||||| | || ||||||||||||||||||| |||||||||    
T  2786687 agttaagtcgcgcaacgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccactg 2786757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 18172267 - 18172197
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||||||| | || |||||||   ||||| | | || |||||||||||||||||||||||||||||    
T  18172267 agttaagtcacgcagtgtcacttaacacacgcacatcacaagctctgcgtgacttaagtcacgcaccactg 18172197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 40034134 - 40034064
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||||  ||||||||||||   |||||||| ||   ||||| |||||||||||||||||||||    
T  40034134 agttaagtcacgcatcgtgacttaactcatgcaccttacaattactgcgagacttaagtcacgcaccactg 40034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 43147542 - 43147488
Alignment:
Q  191 gtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||||||  |||| || | || |||||||||||||||||||||||||||||    
T  43147542 gtgacttaactaacgcatctcacaaactctgcgtgacttaagtcacgcaccactg 43147488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 2740598 - 2740562
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaacttgcgca 207  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  2740598 cgcaagttaagacacactgcgtgacttaacttgcgca 2740562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 3461481 - 3461513
Alignment:
Q  170 acgcaagttaagtcacgctgcgtgacttaactt 202  Q
    ||||||||||||||||||| |||||||||||||    
T  3461481 acgcaagttaagtcacgctacgtgacttaactt 3461513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 28784900 - 28784832
Alignment:
Q  177 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||| |||||||||||||||||   | ||||||||||  | ||||||||||||||||| | ||||||    
T  28784900 ttaagttacgctgcgtgacttaacaaacacaccttataatttatgcgtgacttaagtcacaccccactg 28784832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 3956 - 4023
Alignment:
Q  178 taagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    ||||||||| ||||| ||| ||||  | || ||||||| |||||||||||||||||||||||||||||    
T  3956 taagtcacgatgcgtaactaaactcacacatcttataatctctgcgtgacttaagtcacgcaccactg 4023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 25553 - 25621
Alignment:
Q  175 agttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccac 243  Q
    |||||||||||||||||||| |||| |  | |||||||||| || ||||||||||||| |||| |||||    
T  25553 agttaagtcacgctgcgtgatttaattcacacaccttataatctatgcgtgacttaaggcacgtaccac 25621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 20060 - 20118
Alignment:
Q  187 ctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactg 245  Q
    |||||||| ||||||  ||||||| | || || ||||||||||||||||||||||||||    
T  20060 ctgcgtgagttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 20118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 1830 - 1801
Alignment:
Q  171 cgcaagttaagtcacgctgcgtgacttaac 200  Q
    ||||||||||||||||||||||||||||||    
T  1830 cgcaagttaagtcacgctgcgtgacttaac 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University