View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_low_13 (Length: 257)
Name: NF1958_low_13
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 39451367 - 39451144
Alignment:
| Q |
16 |
tgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39451367 |
tgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcgaggactccattttctcc |
39451268 |
T |
|
| Q |
116 |
tcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggagga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451267 |
tcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggagga |
39451168 |
T |
|
| Q |
216 |
agagaaacttctggaaggttgatg |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
39451167 |
agagaaacttctggaaggttgatg |
39451144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 39475829 - 39475650
Alignment:
| Q |
60 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| ||| ||||| || |||| ||| |||||||||||| || || |||||||| || ||||||| |
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| T |
39475829 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtt |
39475730 |
T |
|
| Q |
160 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatg |
239 |
Q |
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| T |
39475729 |
tctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatg |
39475650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 39486809 - 39486609
Alignment:
| Q |
39 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactcca---ttttctcctcctccagtagtgaggttag |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| || |||| ||| |||||||||||| | |
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| T |
39486809 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgaaggcggcaaggtgtccaggtggttgtccttctctagtagtgaggttgg |
39486710 |
T |
|
| Q |
136 |
aaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggtt |
235 |
Q |
| |
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| || ||||||||||| ||||||||||||||||| |||||||| |||| | |||| ||| | ||||||||| ||||||||| |||||||||||| |
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| T |
39486709 |
atacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatg---acaaaacgtggttcggtgtttgggggaagagaacattctggaaggtt |
39486613 |
T |
|
| Q |
236 |
gatg |
239 |
Q |
| |
|
|||| |
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|
| T |
39486612 |
gatg |
39486609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 39458102 - 39458259
Alignment:
| Q |
16 |
tgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcc |
115 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||| ||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||| |
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| T |
39458102 |
tgaagaagacgagcgtagggacagaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaatgaatgcagctaggactccattttctgg |
39458201 |
T |
|
| Q |
116 |
tcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggaga |
176 |
Q |
| |
|
| || |||||||||| || ||||||| |||||| |||||||||||||||| ||||||| |
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|
| T |
39458202 |
tgct---ttagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggaga |
39458259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 39455000 - 39454783
Alignment:
| Q |
16 |
tgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcc |
115 |
Q |
| |
|
||||||||||||| |||| | || || |||||||||| ||||||||||| |||||| ||||||||||||||| | || ||||||||| || || | |
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|
| T |
39455000 |
tgaagaagacgagtgtagggatggagaactctttggcaacatcaatcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttc |
39454901 |
T |
|
| Q |
116 |
tcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggagga |
215 |
Q |
| |
|
|| |||| |||||||||| |||||||||||||| ||||||||||||||||| ||| |||| | |||||| | || ||||||| |||||||| ||| |
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| T |
39454900 |
acc---agtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatgga---ggaaactggattagtgtttggggga |
39454807 |
T |
|
| Q |
216 |
agagaaacttctggaaggttgatg |
239 |
Q |
| |
|
||||| |||||||||||||||| |
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|
| T |
39454806 |
agagagcattctggaaggttgatg |
39454783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 39472397 - 39472180
Alignment:
| Q |
16 |
tgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcc |
115 |
Q |
| |
|
|||||||||| ||| |||| || || || |||||||||| |||||||||| | |||||||||||||||||||| | | ||||||||||||||||| | |
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|
| T |
39472397 |
tgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaagcggcaaggactccatttt---c |
39472301 |
T |
|
| Q |
116 |
tcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggagga |
215 |
Q |
| |
|
| || ||| |||||||||| || |||||||||| ||||||||||||||||||||||| |||| ||| || | |||| ||| |||||||| | | |
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|
| T |
39472300 |
tgatctggtaatgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcat---agagggaccttgatctgtgtttggggca |
39472204 |
T |
|
| Q |
216 |
agagaaacttctggaaggttgatg |
239 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
39472203 |
agagaacattctggaaggttgatg |
39472180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 39460614 - 39460456
Alignment:
| Q |
16 |
tgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcc |
115 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| | || | ||| ||||| || | | |
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|
| T |
39460614 |
tgaagaagacaagcgtagggactgaaaattctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaaggctgtgagggttccatgtttttc |
39460515 |
T |
|
| Q |
116 |
tcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgagga |
174 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
39460514 |
tctagtagtagtgagattagatacggcttgtttgacgtttgatttctgagcttcgagga |
39460456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 39483592 - 39483462
Alignment:
| Q |
48 |
ttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtt |
147 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| || || ||| ||||| || |||| ||| |||||||||||| || || |||||| |
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|
| T |
39483592 |
ttggcaacatcaatcatggtggtgcagaacatgtcaacaacgaaggcggagaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgta |
39483493 |
T |
|
| Q |
148 |
tgacatttggtttctgagcttcgaggagagc |
178 |
Q |
| |
|
| | ||||||||||||||||| |||||||| |
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|
| T |
39483492 |
ttatgtttggtttctgagcttcaaggagagc |
39483462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 39470588 - 39470724
Alignment:
| Q |
39 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaa |
138 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||||||||||| || | ||| ||| ||||| || | |||||||||||||||| || | |
|
|
| T |
39470588 |
gaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgtt---gttctccagtagtgaggttggaga |
39470684 |
T |
|
| Q |
139 |
cggcttgtttgacatttggtttctgagcttcgaggagagc |
178 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
39470685 |
tagcttgtttgacgtttgctttatgagcttcgaggagagc |
39470724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 39464386 - 39464443
Alignment:
| Q |
39 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtgg |
96 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
39464386 |
gaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtgg |
39464443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 39464451 - 39464559
Alignment:
| Q |
128 |
gaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttct |
227 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||| || |||||||| ||| |||| ||||||||| | | || | ||||||||||||||| |
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|
| T |
39464451 |
gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcat---agcggaacctggatcagaggtttggggaagagaaacttct |
39464547 |
T |
|
| Q |
228 |
ggaaggttgatg |
239 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39464548 |
ggaaggttgatg |
39464559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 43312382 - 43312416
Alignment:
| Q |
56 |
atcaatcatggtggtgcagaacatgtcaacaacga |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43312382 |
atcaatcatggtggtgcagaacatgtcaacaacga |
43312416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 39460428 - 39460394
Alignment:
| Q |
205 |
tgtttggaggaagagaaacttctggaaggttgatg |
239 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39460428 |
tgtttgggggaagagaaacttctggaaggttgatg |
39460394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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