View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_low_15 (Length: 251)
Name: NF1958_low_15
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5531761 - 5531680
Alignment:
| Q |
1 |
tcatttcggtccttaaatgtgtgatacattgttgttactataaaccttgaattctacgggtatcaaaattacaaaaacatct |
82 |
Q |
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| T |
5531761 |
tcatttcggtccttaaatgtgtgatacattgttgttactataaaccttgaattctacgggtatcaaaattacaaaaacatct |
5531680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 5531629 - 5531515
Alignment:
| Q |
88 |
aacacatttgaagacacaactaactaatgaaagacggattaaaggactaaactaagtaatg-nnnnnnntgtgtttaggtatctttttataattttgatg |
186 |
Q |
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| T |
5531629 |
aacacatttgaagaccaaactaactaatgaaagacggattaaaggactaaactaagtaacgaaaaaaaatgtgtttaagtatctttttataattttgata |
5531530 |
T |
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| Q |
187 |
cattcaagaactatt |
201 |
Q |
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| T |
5531529 |
cattcaagaactatt |
5531515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 5531493 - 5531459
Alignment:
| Q |
201 |
tatttaaagaccaaatttgttgcttactcatattt |
235 |
Q |
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| T |
5531493 |
tatttaaagaccaaaattgttgcttactcatattt |
5531459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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