View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1958_low_17 (Length: 245)
Name: NF1958_low_17
Description: NF1958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1958_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 45396710 - 45396484
Alignment:
| Q |
1 |
ccatgacttctgtcagatatctctttgaaacataagaggctgtcattggtctaagtctttctggattggcttaaagaatggatcttcaaggtttgtgtca |
100 |
Q |
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| T |
45396710 |
ccatgacttctgtcagatatccctttgaaacata-gaggctgtcattggtctaagtctttctgaattggcttaaagaatggatcttcaaggtttgtgtca |
45396612 |
T |
|
| Q |
101 |
atgtatctctaaagctacaatctcaacataaaaatagcttgctaactagaaaccaccggtgtctacaaagtggaatgatcgaactcacaatccttgttag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45396611 |
atgtatctctaaagctacaatctcaacataaaaatagcttgctaactagaaaccaccggtgtctacaaagtggaatgatcgaactcacaattcttgttag |
45396512 |
T |
|
| Q |
201 |
attgagttcaaagtccagcatataattc |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
45396511 |
attgagttcaaagtccagcatataattc |
45396484 |
T |
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